Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2011656..2011801 | Replicon | chromosome |
| Accession | NZ_CP092793 | ||
| Organism | Klebsiella pneumoniae strain XH1507 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2011692..2011794 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2011656..2011801 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ML258_RS09850 (ML258_09850) | 2006786..2008846 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| ML258_RS09855 (ML258_09855) | 2008850..2009509 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| ML258_RS09860 (ML258_09860) | 2009588..2009818 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ML258_RS09865 (ML258_09865) | 2009931..2010305 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| ML258_RS09870 (ML258_09870) | 2010309..2011178 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| ML258_RS09875 (ML258_09875) | 2011195..2011533 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2011656..2011801 | - | 146 | - | - | Antitoxin |
| - | 2011692..2011794 | + | 103 | - | - | Toxin |
| ML258_RS09880 (ML258_09880) | 2012169..2012312 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| ML258_RS09885 (ML258_09885) | 2012417..2013385 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| ML258_RS09890 (ML258_09890) | 2013542..2014195 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| ML258_RS09895 (ML258_09895) | 2014192..2014383 | - | 192 | WP_002911395.1 | YebW family protein | - |
| ML258_RS09900 (ML258_09900) | 2014481..2014720 | - | 240 | WP_002911393.1 | YebV family protein | - |
| ML258_RS09905 (ML258_09905) | 2014836..2016269 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T237176 NZ_CP092793:2011692-2011794 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT237176 NZ_CP092793:c2011801-2011656 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
