Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2012384..2012529 | Replicon | chromosome |
| Accession | NZ_CP092786 | ||
| Organism | Klebsiella pneumoniae strain XH1508 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2012420..2012522 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2012384..2012529 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ML259_RS09865 (ML259_09865) | 2007514..2009574 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| ML259_RS09870 (ML259_09870) | 2009578..2010237 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| ML259_RS09875 (ML259_09875) | 2010316..2010546 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ML259_RS09880 (ML259_09880) | 2010659..2011033 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| ML259_RS09885 (ML259_09885) | 2011037..2011906 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| ML259_RS09890 (ML259_09890) | 2011923..2012261 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2012384..2012529 | - | 146 | - | - | Antitoxin |
| - | 2012420..2012522 | + | 103 | - | - | Toxin |
| ML259_RS09895 (ML259_09895) | 2012897..2013040 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| ML259_RS09900 (ML259_09900) | 2013145..2014113 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| ML259_RS09905 (ML259_09905) | 2014270..2014923 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| ML259_RS09910 (ML259_09910) | 2014920..2015111 | - | 192 | WP_002911395.1 | YebW family protein | - |
| ML259_RS09915 (ML259_09915) | 2015209..2015448 | - | 240 | WP_002911393.1 | YebV family protein | - |
| ML259_RS09920 (ML259_09920) | 2015564..2016997 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T237147 NZ_CP092786:2012420-2012522 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT237147 NZ_CP092786:c2012529-2012384 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
