Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1953513..1953658 | Replicon | chromosome |
| Accession | NZ_CP092759 | ||
| Organism | Klebsiella pneumoniae strain bat16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1953549..1953651 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1953513..1953658 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MKZ45_RS09605 (MKZ45_09605) | 1948643..1950703 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| MKZ45_RS09610 (MKZ45_09610) | 1950707..1951366 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| MKZ45_RS09615 (MKZ45_09615) | 1951445..1951675 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MKZ45_RS09620 (MKZ45_09620) | 1951788..1952162 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MKZ45_RS09625 (MKZ45_09625) | 1952166..1953035 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| MKZ45_RS09630 (MKZ45_09630) | 1953052..1953390 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1953513..1953658 | - | 146 | - | - | Antitoxin |
| - | 1953549..1953651 | + | 103 | - | - | Toxin |
| MKZ45_RS09635 (MKZ45_09635) | 1954026..1954169 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MKZ45_RS09640 (MKZ45_09640) | 1954274..1955242 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| MKZ45_RS09645 (MKZ45_09645) | 1955399..1956052 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| MKZ45_RS09650 (MKZ45_09650) | 1956049..1956240 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MKZ45_RS09655 (MKZ45_09655) | 1956338..1956577 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MKZ45_RS09660 (MKZ45_09660) | 1956693..1958126 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T237091 NZ_CP092759:1953549-1953651 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT237091 NZ_CP092759:c1953658-1953513 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
