Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2409891..2410036 | Replicon | chromosome |
| Accession | NZ_CP092656 | ||
| Organism | Klebsiella pneumoniae strain NB5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2409927..2410029 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2409891..2410036 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MJ642_RS14825 | 2405021..2407081 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| MJ642_RS14830 | 2407085..2407744 | - | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| MJ642_RS14835 | 2407823..2408053 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MJ642_RS14840 | 2408166..2408540 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MJ642_RS14845 | 2408544..2409413 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| MJ642_RS14850 | 2409430..2409768 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 2409891..2410036 | - | 146 | - | - | Antitoxin |
| - | 2409927..2410029 | + | 103 | - | - | Toxin |
| MJ642_RS14855 | 2410404..2410547 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MJ642_RS14860 | 2410652..2411620 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| MJ642_RS14865 | 2411777..2412430 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| MJ642_RS14870 | 2412427..2412618 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MJ642_RS14875 | 2412716..2412955 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MJ642_RS14880 | 2413071..2414504 | - | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T236910 NZ_CP092656:2409927-2410029 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT236910 NZ_CP092656:c2410036-2409891 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
