Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | slvAT/RES(toxin) |
| Location | 3331471..3332390 | Replicon | chromosome |
| Accession | NC_012560 | ||
| Organism | Azotobacter vinelandii DJ | ||
Toxin (Protein)
| Gene name | slvT | Uniprot ID | M9YPT7 |
| Locus tag | AVIN_RS14760 | Protein ID | WP_012701784.1 |
| Coordinates | 3331854..3332390 (+) | Length | 179 a.a. |
Antitoxin (Protein)
| Gene name | slvA | Uniprot ID | - |
| Locus tag | AVIN_RS14755 | Protein ID | WP_012701783.1 |
| Coordinates | 3331471..3331857 (+) | Length | 129 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVIN_RS14735 | 3326661..3327776 | - | 1116 | WP_012701778.1 | alpha/beta fold hydrolase | - |
| AVIN_RS14740 | 3327773..3328543 | - | 771 | WP_012701779.1 | carboxymuconolactone decarboxylase family protein | - |
| AVIN_RS14745 | 3328578..3329858 | - | 1281 | WP_012701780.1 | Bcr/CflA family multidrug efflux MFS transporter | - |
| AVIN_RS14750 | 3329891..3330946 | - | 1056 | WP_012701782.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| AVIN_RS14755 | 3331471..3331857 | + | 387 | WP_012701783.1 | MbcA/ParS/Xre antitoxin family protein | Antitoxin |
| AVIN_RS14760 | 3331854..3332390 | + | 537 | WP_012701784.1 | RES family NAD+ phosphorylase | Toxin |
| AVIN_RS14765 | 3332401..3332796 | - | 396 | WP_012701785.1 | VOC family protein | - |
| AVIN_RS14770 | 3332800..3333195 | - | 396 | WP_012701786.1 | VOC family protein | - |
| AVIN_RS14775 | 3333210..3333953 | - | 744 | WP_012701787.1 | SDR family oxidoreductase | - |
| AVIN_RS14780 | 3334173..3335033 | + | 861 | WP_072432869.1 | AraC family transcriptional regulator | - |
| AVIN_RS14785 | 3335002..3335895 | - | 894 | WP_012701790.1 | LysR family transcriptional regulator | - |
| AVIN_RS14790 | 3335899..3336801 | - | 903 | WP_012701791.1 | LysR family transcriptional regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 3323671..3335895 | 12224 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 179 a.a. Molecular weight: 19729.24 Da Isoelectric Point: 4.6791
>T23691 WP_012701784.1 NC_012560:3331854-3332390 [Azotobacter vinelandii DJ]
MIPSVTRGEDKDEACYRVITPVYASMPLSGMGAARQGGRFNRPGQEALYLALDESTALAEYKQDNPWLRPGTICTFFVRE
LRVADFSAGFDPERWPSLWADFAVDWRAEWFGKSVEPPTWYMADDVVAEGLDGILFPSQARPGGTNLVVYRSSARPAAQL
RVYDPDGALQKIAPPTGH
MIPSVTRGEDKDEACYRVITPVYASMPLSGMGAARQGGRFNRPGQEALYLALDESTALAEYKQDNPWLRPGTICTFFVRE
LRVADFSAGFDPERWPSLWADFAVDWRAEWFGKSVEPPTWYMADDVVAEGLDGILFPSQARPGGTNLVVYRSSARPAAQL
RVYDPDGALQKIAPPTGH
Download Length: 537 bp
>T23691 NC_012560:3331854-3332390 [Azotobacter vinelandii DJ]
ATGATCCCGAGCGTCACCCGGGGCGAGGACAAGGACGAGGCCTGCTACCGCGTCATCACGCCCGTCTATGCCAGTATGCC
GCTGTCCGGCATGGGGGCGGCACGCCAGGGGGGTCGTTTCAACCGGCCCGGCCAGGAAGCGCTCTACCTAGCGCTGGACG
AATCCACCGCACTGGCGGAGTACAAGCAGGACAACCCCTGGCTGCGTCCGGGTACGATCTGCACGTTCTTTGTGCGCGAG
TTGCGGGTGGCCGATTTCAGCGCCGGGTTCGACCCGGAACGATGGCCGTCGCTGTGGGCCGATTTCGCGGTGGACTGGCG
TGCCGAGTGGTTCGGCAAATCCGTCGAACCACCGACCTGGTACATGGCCGACGATGTGGTTGCCGAGGGGCTGGACGGCA
TTCTGTTCCCCTCGCAGGCCCGCCCCGGCGGAACCAACCTGGTGGTCTATCGGAGTTCGGCCCGGCCTGCGGCCCAACTG
CGCGTGTACGACCCGGACGGGGCATTACAGAAGATCGCGCCGCCAACCGGCCACTGA
ATGATCCCGAGCGTCACCCGGGGCGAGGACAAGGACGAGGCCTGCTACCGCGTCATCACGCCCGTCTATGCCAGTATGCC
GCTGTCCGGCATGGGGGCGGCACGCCAGGGGGGTCGTTTCAACCGGCCCGGCCAGGAAGCGCTCTACCTAGCGCTGGACG
AATCCACCGCACTGGCGGAGTACAAGCAGGACAACCCCTGGCTGCGTCCGGGTACGATCTGCACGTTCTTTGTGCGCGAG
TTGCGGGTGGCCGATTTCAGCGCCGGGTTCGACCCGGAACGATGGCCGTCGCTGTGGGCCGATTTCGCGGTGGACTGGCG
TGCCGAGTGGTTCGGCAAATCCGTCGAACCACCGACCTGGTACATGGCCGACGATGTGGTTGCCGAGGGGCTGGACGGCA
TTCTGTTCCCCTCGCAGGCCCGCCCCGGCGGAACCAACCTGGTGGTCTATCGGAGTTCGGCCCGGCCTGCGGCCCAACTG
CGCGTGTACGACCCGGACGGGGCATTACAGAAGATCGCGCCGCCAACCGGCCACTGA
Antitoxin
Download Length: 129 a.a. Molecular weight: 14223.21 Da Isoelectric Point: 6.4673
>AT23691 WP_012701783.1 NC_012560:3331471-3331857 [Azotobacter vinelandii DJ]
MESCAMSTVLQQPFVEQFREPNTPYLSPARIGELFGFQVQELAERAHVHRNTPTARPQAPQLQKYLQDMVRLLAVATEMT
GDKKRAAFLLRNEPLRAFGYKTAEALVQDGRTDDVIAYLESLAGGAAG
MESCAMSTVLQQPFVEQFREPNTPYLSPARIGELFGFQVQELAERAHVHRNTPTARPQAPQLQKYLQDMVRLLAVATEMT
GDKKRAAFLLRNEPLRAFGYKTAEALVQDGRTDDVIAYLESLAGGAAG
Download Length: 387 bp
>AT23691 NC_012560:3331471-3331857 [Azotobacter vinelandii DJ]
ATGGAGTCATGCGCCATGAGCACCGTATTGCAACAGCCCTTTGTTGAGCAGTTCCGCGAGCCGAACACACCCTACCTGTC
GCCGGCCCGGATCGGGGAGCTCTTCGGCTTCCAGGTCCAGGAACTGGCCGAGCGTGCGCACGTGCATCGCAATACGCCGA
CGGCCCGCCCGCAGGCGCCGCAGTTGCAGAAGTACCTGCAGGACATGGTGCGCTTGCTGGCGGTGGCCACCGAGATGACC
GGCGACAAGAAGCGTGCGGCTTTCCTGCTGCGCAACGAACCGCTGCGTGCCTTCGGCTACAAGACGGCCGAGGCTCTGGT
TCAGGATGGACGGACCGATGACGTCATCGCCTACCTGGAATCGCTTGCGGGCGGTGCTGCTGGATGA
ATGGAGTCATGCGCCATGAGCACCGTATTGCAACAGCCCTTTGTTGAGCAGTTCCGCGAGCCGAACACACCCTACCTGTC
GCCGGCCCGGATCGGGGAGCTCTTCGGCTTCCAGGTCCAGGAACTGGCCGAGCGTGCGCACGTGCATCGCAATACGCCGA
CGGCCCGCCCGCAGGCGCCGCAGTTGCAGAAGTACCTGCAGGACATGGTGCGCTTGCTGGCGGTGGCCACCGAGATGACC
GGCGACAAGAAGCGTGCGGCTTTCCTGCTGCGCAACGAACCGCTGCGTGCCTTCGGCTACAAGACGGCCGAGGCTCTGGT
TCAGGATGGACGGACCGATGACGTCATCGCCTACCTGGAATCGCTTGCGGGCGGTGCTGCTGGATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|