Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3119749..3119894 | Replicon | chromosome |
| Accession | NZ_CP092648 | ||
| Organism | Klebsiella pneumoniae strain KP7728 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3119756..3119858 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3119749..3119894 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MJ615_RS15295 | 3115281..3116714 | + | 1434 | WP_064190786.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MJ615_RS15300 | 3116830..3117069 | + | 240 | WP_002911393.1 | YebV family protein | - |
| MJ615_RS15305 | 3117167..3117358 | + | 192 | WP_002911395.1 | YebW family protein | - |
| MJ615_RS15310 | 3117355..3118008 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| MJ615_RS15315 | 3118165..3119133 | + | 969 | WP_074195444.1 | VirK/YbjX family protein | - |
| MJ615_RS15320 | 3119238..3119381 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3119749..3119894 | + | 146 | - | - | Antitoxin |
| - | 3119756..3119858 | - | 103 | - | - | Toxin |
| MJ615_RS15325 | 3120017..3120355 | - | 339 | WP_002911404.1 | YebY family protein | - |
| MJ615_RS15330 | 3120372..3121241 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| MJ615_RS15335 | 3121245..3121619 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MJ615_RS15340 | 3121732..3121962 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MJ615_RS15345 | 3122041..3122700 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| MJ615_RS15350 | 3122704..3124764 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T236878 NZ_CP092648:c3119858-3119756 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT236878 NZ_CP092648:3119749-3119894 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
