Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 428700..428971 | Replicon | chromosome |
| Accession | NZ_CP092647 | ||
| Organism | Escherichia coli strain EC5502 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 428738..428841 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 428700..428971 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MJ614_RS04275 | 425857..427296 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MJ614_RS04280 | 427414..427650 | + | 237 | WP_001295499.1 | YebV family protein | - |
| MJ614_RS04285 | 427755..427946 | + | 192 | WP_001296140.1 | YebW family protein | - |
| MJ614_RS04290 | 427947..428603 | - | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| - | 428700..428971 | + | 272 | - | - | Antitoxin |
| - | 428738..428841 | - | 104 | - | - | Toxin |
| MJ614_RS04295 | 428999..429340 | - | 342 | WP_000976472.1 | YebY family protein | - |
| MJ614_RS04300 | 429353..430225 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| MJ614_RS04305 | 430229..430603 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| MJ614_RS04310 | 430742..430972 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MJ614_RS04315 | 431074..431730 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MJ614_RS04320 | 431754..432416 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T236848 NZ_CP092647:c428841-428738 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT236848 NZ_CP092647:428700-428971 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
