Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1936381..1936525 | Replicon | chromosome |
| Accession | NZ_CP092632 | ||
| Organism | Klebsiella variicola subsp. variicola strain ML.9ba2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1936417..1936519 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1936381..1936525 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MKK01_RS09320 (MKK01_09320) | 1931511..1933571 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| MKK01_RS09325 (MKK01_09325) | 1933575..1934234 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| MKK01_RS09330 (MKK01_09330) | 1934313..1934543 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| MKK01_RS09335 (MKK01_09335) | 1934657..1935031 | + | 375 | WP_008804269.1 | CopC domain-containing protein YobA | - |
| MKK01_RS09340 (MKK01_09340) | 1935035..1935904 | + | 870 | WP_117130699.1 | copper homeostasis membrane protein CopD | - |
| MKK01_RS09345 (MKK01_09345) | 1935921..1936259 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1936381..1936525 | - | 145 | - | - | Antitoxin |
| - | 1936417..1936519 | + | 103 | - | - | Toxin |
| MKK01_RS09350 (MKK01_09350) | 1936904..1937047 | - | 144 | WP_046621074.1 | Ecr family regulatory small membrane protein | - |
| MKK01_RS09355 (MKK01_09355) | 1937151..1938119 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| MKK01_RS09360 (MKK01_09360) | 1938276..1938929 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| MKK01_RS09365 (MKK01_09365) | 1938926..1939117 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MKK01_RS09370 (MKK01_09370) | 1939215..1939454 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MKK01_RS09375 (MKK01_09375) | 1939570..1941003 | - | 1434 | WP_122533444.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T236782 NZ_CP092632:1936417-1936519 [Klebsiella variicola subsp. variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT236782 NZ_CP092632:c1936525-1936381 [Klebsiella variicola subsp. variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
