Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1930525..1930670 | Replicon | chromosome |
| Accession | NZ_CP092589 | ||
| Organism | Klebsiella pneumoniae strain EFN 299 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1930561..1930663 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1930525..1930670 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MKT41_RS09450 (MKT41_09450) | 1925655..1927715 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| MKT41_RS09455 (MKT41_09455) | 1927719..1928378 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| MKT41_RS09460 (MKT41_09460) | 1928457..1928687 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MKT41_RS09465 (MKT41_09465) | 1928800..1929174 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MKT41_RS09470 (MKT41_09470) | 1929178..1930047 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| MKT41_RS09475 (MKT41_09475) | 1930064..1930402 | + | 339 | WP_004189269.1 | YebY family protein | - |
| - | 1930525..1930670 | - | 146 | - | - | Antitoxin |
| - | 1930561..1930663 | + | 103 | - | - | Toxin |
| MKT41_RS09480 (MKT41_09480) | 1931037..1931180 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MKT41_RS09485 (MKT41_09485) | 1931285..1932253 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| MKT41_RS09490 (MKT41_09490) | 1932410..1933063 | + | 654 | WP_004189273.1 | protein-serine/threonine phosphatase | - |
| MKT41_RS09495 (MKT41_09495) | 1933060..1933251 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MKT41_RS09500 (MKT41_09500) | 1933349..1933588 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MKT41_RS09505 (MKT41_09505) | 1933704..1935137 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T236714 NZ_CP092589:1930561-1930663 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT236714 NZ_CP092589:c1930670-1930525 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
