Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) tsbAT/-
Location 1885913..1886689 Replicon chromosome
Accession NZ_CP092558
Organism Staphylococcus aureus strain VMRSA-WC052

Toxin (Protein)


Gene name tsbT Uniprot ID X5E2E6
Locus tag MKI51_RS09065 Protein ID WP_000031108.1
Coordinates 1885913..1886065 (-) Length 51 a.a.

Antitoxin (Protein)


Gene name tsbA Uniprot ID W8U4V4
Locus tag MKI51_RS09070 Protein ID WP_001251224.1
Coordinates 1886090..1886689 (-) Length 200 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MKI51_RS09050 (MKI51_001793) 1882115..1882936 + 822 WP_000669376.1 RluA family pseudouridine synthase -
MKI51_RS09055 (MKI51_001794) 1883389..1884774 - 1386 WP_000116228.1 class II fumarate hydratase -
MKI51_RS09060 (MKI51_001795) 1884970..1885365 - 396 WP_000901023.1 hypothetical protein -
MKI51_RS09065 (MKI51_001796) 1885913..1886065 - 153 WP_000031108.1 SAS053 family protein Toxin
MKI51_RS09070 (MKI51_001797) 1886090..1886689 - 600 WP_001251224.1 glucosamine-6-phosphate isomerase Antitoxin
MKI51_RS09075 (MKI51_001798) 1886848..1887318 - 471 WP_000181394.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
MKI51_RS09080 (MKI51_001799) 1887323..1888450 - 1128 WP_000379980.1 tRNA epoxyqueuosine(34) reductase QueG -
MKI51_RS09085 (MKI51_001800) 1888601..1889323 - 723 WP_000590809.1 amino acid ABC transporter ATP-binding protein -
MKI51_RS09090 (MKI51_001801) 1889316..1890773 - 1458 WP_000649908.1 ABC transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Glucosamine-6-phosphate isomerase

(124-196)


Sequences

Toxin        


Download         Length: 51 a.a.        Molecular weight: 5936.28 Da        Isoelectric Point: 3.8962

>T236583 WP_000031108.1 NZ_CP092558:c1886065-1885913 [Staphylococcus aureus]
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ

Download         Length: 153 bp

>T236583 NZ_LR698979:565808-566077 [Bifidobacterium thermophilum]
TTGGCTTGGAAGATTGAAATCGATAAGGGCGTCCAGCGTTCGATGAAGAAACTGGATCGCCATGTCGCCAAGAGAATCAT
CGCAAAACTTAGGGAAATTTCACAGTTGGAAGATCCAAGAAGCACTGGCAAAGCTCTTGTCGGTAATCTGGCAGGGCTGT
GGCGTTACCGTGTTGGGGACTATCAGATCGTGTGCGATATAGAAGATGAGGTTCTACTGATTCTTGTGGTTGATGTCGCG
CACAGGAGCAAGGTGTACAAGCGCCGTTGA

Antitoxin


Download         Length: 200 a.a.        Molecular weight: 22343.47 Da        Isoelectric Point: 5.1445

>AT236583 WP_001251224.1 NZ_CP092558:c1886689-1886090 [Staphylococcus aureus]
MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNVEKHAVDFSQINILDYDDKKSYFEALGV
PAGQVYPIAYEKDAIELIADKIKTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFLVVTGANKRDVVEKLYQENGK
TSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA

Download         Length: 600 bp

>AT236583 NZ_LR698979:565588-565824 [Bifidobacterium thermophilum]
ATGGCCACGGCTACTGCAGCATTGAGGATGCCTGTCGAATTGGCGGCTCGTTACGATCGTTTGGCGAAAGCAACTGGCCG
TACGAAGACGTTTTATATGAACGAAGCCCTTACCGAGTCAATCGATAGGCTTGAGTATGAATACGGCATTATGAAAAAGG
TTGAGGATTGGCGTGCCGGCATACTCGAGACTGTGACGCTCGACGAGCTGGAGGAAAGCCTTGGCTTGGAAGATTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB X5E2E6

Antitoxin

Source ID Structure
AlphaFold DB W8U4V4

References