Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2130789..2131057 | Replicon | chromosome |
| Accession | NZ_CP092534 | ||
| Organism | Escherichia coli strain DS566 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2130917..2131019 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2130789..2131057 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MKD44_RS10140 | 2127342..2128004 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| MKD44_RS10145 | 2128028..2128684 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MKD44_RS10150 | 2128786..2129016 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MKD44_RS10155 | 2129155..2129529 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MKD44_RS10160 | 2129533..2130405 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| MKD44_RS10165 | 2130418..2130759 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2130789..2131057 | - | 269 | - | - | Antitoxin |
| - | 2130917..2131019 | + | 103 | - | - | Toxin |
| MKD44_RS10170 | 2131154..2131810 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| MKD44_RS10175 | 2131811..2132002 | - | 192 | WP_024186842.1 | YebW family protein | - |
| MKD44_RS10180 | 2132107..2132343 | - | 237 | WP_001295499.1 | YebV family protein | - |
| MKD44_RS10185 | 2132462..2133901 | - | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T236430 NZ_CP092534:2130917-2131019 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT236430 NZ_CP092534:c2131057-2130789 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
