Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2130768..2131036 | Replicon | chromosome |
| Accession | NZ_CP092533 | ||
| Organism | Escherichia coli strain DS566-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2130896..2130998 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2130768..2131036 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MKD47_RS10140 | 2127321..2127983 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| MKD47_RS10145 | 2128007..2128663 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MKD47_RS10150 | 2128765..2128995 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MKD47_RS10155 | 2129134..2129508 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MKD47_RS10160 | 2129512..2130384 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| MKD47_RS10165 | 2130397..2130738 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2130768..2131036 | - | 269 | - | - | Antitoxin |
| - | 2130896..2130998 | + | 103 | - | - | Toxin |
| MKD47_RS10170 | 2131133..2131789 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| MKD47_RS10175 | 2131790..2131981 | - | 192 | WP_024186842.1 | YebW family protein | - |
| MKD47_RS10180 | 2132086..2132322 | - | 237 | WP_001295499.1 | YebV family protein | - |
| MKD47_RS10185 | 2132441..2133880 | - | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T236402 NZ_CP092533:2130896-2130998 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT236402 NZ_CP092533:c2131036-2130768 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
