Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1898266..1898413 | Replicon | chromosome |
| Accession | NZ_CP092512 | ||
| Organism | Klebsiella quasipneumoniae strain EF262 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1898307..1898409 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1898266..1898413 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MKM89_RS09170 | 1893401..1895461 | + | 2061 | WP_004203388.1 | oligopeptidase B | - |
| MKM89_RS09175 | 1895465..1896124 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| MKM89_RS09180 | 1896203..1896433 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MKM89_RS09185 | 1896546..1896920 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| MKM89_RS09190 | 1896924..1897793 | + | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| MKM89_RS09195 | 1897810..1898148 | + | 339 | WP_241505257.1 | YebY family protein | - |
| - | 1898266..1898413 | - | 148 | - | - | Antitoxin |
| - | 1898307..1898409 | + | 103 | - | - | Toxin |
| MKM89_RS09200 | 1898797..1898940 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| MKM89_RS09205 | 1899044..1900012 | - | 969 | WP_062914108.1 | VirK/YbjX family protein | - |
| MKM89_RS09210 | 1900169..1900822 | + | 654 | WP_099441356.1 | protein-serine/threonine phosphatase | - |
| MKM89_RS09215 | 1900819..1901010 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MKM89_RS09220 | 1901108..1901347 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MKM89_RS09225 | 1901464..1902897 | - | 1434 | WP_064183816.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T236354 NZ_CP092512:1898307-1898409 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT236354 NZ_CP092512:c1898413-1898266 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
