Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1840463..1840731 | Replicon | chromosome |
| Accession | NZ_CP092500 | ||
| Organism | Escherichia coli strain A30 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1840590..1840693 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1840463..1840731 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LU695_RS08920 | 1837016..1837678 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LU695_RS08925 | 1837702..1838358 | - | 657 | Protein_1746 | carbon-nitrogen hydrolase family protein YobB | - |
| LU695_RS08930 | 1838460..1838690 | - | 231 | WP_112867277.1 | DNA polymerase III subunit theta | - |
| LU695_RS08935 | 1838829..1839203 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LU695_RS08940 | 1839207..1840079 | + | 873 | WP_258314242.1 | copper homeostasis membrane protein CopD | - |
| LU695_RS08945 | 1840092..1840433 | + | 342 | WP_000976478.1 | YebY family protein | - |
| - | 1840463..1840731 | - | 269 | - | - | Antitoxin |
| - | 1840590..1840693 | + | 104 | - | - | Toxin |
| LU695_RS08950 | 1840828..1841484 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| LU695_RS08955 | 1841485..1841676 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LU695_RS08960 | 1841781..1842017 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LU695_RS08965 | 1842135..1843574 | - | 1440 | WP_258314243.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T236314 NZ_CP092500:1840590-1840693 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT236314 NZ_CP092500:c1840731-1840463 [Escherichia coli]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
