Detailed information of TA system TA023629

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/PIN(toxin)
• Location: 2810836..2811476
• Replicon: chromosome
• Accession: NC_012207
• Organism: Mycobacterium bovis BCG str. Tokyo 172

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TQ08
• Locus tag: JTY_RS13150
• Protein ID: WP_003412970.1
• Coordinates: 2810836..2811255 (-)
• Length: 140 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TQ09
• Locus tag: JTY_RS13155
• Protein ID: WP_003412975.1
• Coordinates: 2811252..2811476 (-)
• Length: 75 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
JTY_RS13125	2806421..2807143	-	723	WP_003412957.1	DUF1906 domain-containing protein	-
JTY_RS13130	2807660..2807887	+	228	WP_003412960.1	type II toxin-antitoxin system VapB family antitoxin	-
JTY_RS13135	2807884..2808285	+	402	WP_003412963.1	PIN domain-containing protein	-
JTY_RS13140	2808320..2809240	-	921	WP_011799273.1	restriction endonuclease	-
JTY_RS22270	2809581..2809826	-	246	WP_071854223.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	-
JTY_RS13145	2809885..2810835	+	951	WP_003911916.1	Lsr2 family protein	-
JTY_RS13150	2810836..2811255	-	420	WP_003412970.1	type II toxin-antitoxin system VapC family toxin	Toxin
JTY_RS13155	2811252..2811476	-	225	WP_003412975.1	antitoxin VapB39	Antitoxin
JTY_RS13160	2811507..2814350	-	2844	WP_003899363.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	-
JTY_RS13165	2814422..2814823	-	402	WP_003412981.1	hypothetical protein	-
JTY_RS13170	2814823..2815293	-	471	WP_003412985.1	transcription antitermination factor NusB	-
JTY_RS13175	2815296..2815859	-	564	WP_003412989.1	elongation factor P	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (4-128)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 140 a.a.
• Molecular weight: 14732.70 Da
• Isoelectric Point: 6.7519

>T23629 WP_003412970.1 NC_012207:c2811255-2810836 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTPAIAIAQLAAMTSLAGHTF
WPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVTFDAALADSASAGLVEVL

Nucleotide

• Length: 420 bp

>T23629 NC_012207:c2811255-2810836 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
GTGACGGCACTGCTCGATGTCAATGTGCTGATCGCGCTGGGCTGGCCGAATCACGTTCACCATGCGGCCGCGCAGCGATG
GTTCACGCAGTTCTCCTCGAATGGGTGGGCCACCACGCCGATCACCGAGGCAGGGTATGTCCGAATTTCAAGCAATCGCA
GTGTGATGCAGGTGTCGACCACGCCGGCTATCGCGATCGCTCAGTTGGCGGCGATGACTTCTCTTGCCGGGCACACGTTT
TGGCCTGACGATGTGCCACTGATCGTTGGGAGCGCCGGCGATCGCGATGCGGTGTCCAACCACCGTCGGGTCACCGACTG
CCATCTCATCGCCTTGGCCGCGCGCTACGGGGGCCGGTTGGTCACATTCGATGCCGCACTGGCCGATTCAGCATCCGCAG
GCCTCGTCGAGGTGTTGTAG

Antitoxin

Protein

• Length: 75 a.a.
• Molecular weight: 7993.94 Da
• Isoelectric Point: 4.0057

>AT23629 WP_003412975.1 NC_012207:c2811476-2811252 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
MRTTLQIDDDVLEDARSIARSEGKSVGAVISELARRSLRPVGIVEVDGFPVFDVPPDAPTVTSEDVVRALEDDV

Nucleotide

• Length: 225 bp

>AT23629 NC_012207:c2811476-2811252 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
ATGCGCACCACGTTGCAGATTGATGATGATGTTCTAGAAGATGCTCGTAGCATCGCGCGGTCGGAGGGCAAGTCAGTCGG
CGCGGTAATTTCTGAGTTGGCGCGTAGGTCGCTCCGTCCGGTTGGGATTGTCGAGGTTGACGGATTTCCGGTTTTTGATG
TTCCGCCGGATGCGCCGACGGTGACTTCCGAGGATGTCGTCCGCGCGCTCGAGGACGACGTGTGA

Structures

Toxin

• AlphaFold DB: G0TQ08

Antitoxin

• AlphaFold DB: G0TQ09