Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2190407..2190550 | Replicon | chromosome |
| Accession | NZ_CP092493 | ||
| Organism | Citrobacter freundii strain SCLZS47 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2190442..2190545 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2190407..2190550 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MJ253_RS10780 | 2186854..2187516 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| MJ253_RS10785 | 2187540..2188196 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| MJ253_RS10790 | 2188303..2188533 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| MJ253_RS10795 | 2188677..2189051 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| MJ253_RS10800 | 2189055..2189927 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| MJ253_RS10805 | 2189948..2190286 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 2190407..2190550 | - | 144 | - | - | Antitoxin |
| - | 2190442..2190545 | + | 104 | - | - | Toxin |
| MJ253_RS10810 | 2190699..2191340 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| MJ253_RS10815 | 2191341..2191532 | - | 192 | WP_003034941.1 | YebW family protein | - |
| MJ253_RS10820 | 2191635..2191871 | - | 237 | WP_029139506.1 | YebV family protein | - |
| MJ253_RS10825 | 2191972..2193360 | - | 1389 | WP_197730871.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T236282 NZ_CP092493:2190442-2190545 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT236282 NZ_CP092493:c2190550-2190407 [Citrobacter freundii]
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
