Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2186946..2187086 Replicon chromosome
Accession NZ_CP092466
Organism Citrobacter portucalensis strain Cf7303

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2186981..2187084 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2186946..2187086 (-)

Genomic Context

LY264_RS10595LY264_RS10600LY264_RS10605--LY264_RS10580LY264_RS10585LY264_RS10590--LY264_RS10610LY264_RS10615LY264_RS10620LY264_RS10625LY264_RS10630LY264_RS10635
Location: 2185216..2185590 (375 bp)
Type: Others
Protein ID: WP_003833799.1
Location: 2185594..2186466 (873 bp)
Type: Others
Protein ID: WP_008785042.1
Location: 2186487..2186825 (339 bp)
Type: Others
Protein ID: WP_032943770.1
Location: 2186981..2187084 (104 bp)
Type: Toxin
Protein ID: -
Location: 2183393..2184055 (663 bp)
Type: Others
Protein ID: WP_003833802.1
Location: 2184079..2184735 (657 bp)
Type: Others
Protein ID: WP_008785043.1
Location: 2184842..2185072 (231 bp)
Type: Others
Protein ID: WP_003034925.1
Location: 2186946..2187086 (141 bp)
Type: Antitoxin
Protein ID: -
Location: 2187162..2188247 (1086 bp)
Type: Others
Protein ID: WP_071692209.1
Location: 2188216..2188488 (273 bp)
Type: Others
Protein ID: WP_071692210.1
Location: 2188553..2188795 (243 bp)
Type: Others
Protein ID: WP_065944795.1
Location: 2188782..2188985 (204 bp)
Type: Others
Protein ID: WP_003841645.1
Location: 2188978..2189322 (345 bp)
Type: Others
Protein ID: WP_171845942.1
Location: 2189357..2190448 (1092 bp)
Type: Others
Protein ID: WP_071692475.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
LY264_RS10580 (LY264_10580)2183393..2184055-663WP_003833802.1exodeoxyribonuclease X-
LY264_RS10585 (LY264_10585)2184079..2184735-657WP_008785043.1carbon-nitrogen hydrolase family protein-
LY264_RS10590 (LY264_10590)2184842..2185072-231WP_003034925.1DNA polymerase III subunit theta-
LY264_RS10595 (LY264_10595)2185216..2185590+375WP_003833799.1CopC domain-containing protein YobA-
LY264_RS10600 (LY264_10600)2185594..2186466+873WP_008785042.1copper homeostasis membrane protein CopD-
LY264_RS10605 (LY264_10605)2186487..2186825+339WP_032943770.1YebY family protein-
-2186946..2187086-141--Antitoxin
-2186981..2187084+104--Toxin
LY264_RS10610 (LY264_10610)2187162..2188247-1086WP_071692209.1phage integrase Arm DNA-binding domain-containing protein-
LY264_RS10615 (LY264_10615)2188216..2188488-273WP_071692210.1excisionase-
LY264_RS10620 (LY264_10620)2188553..2188795-243WP_065944795.1DUF4060 family protein-
LY264_RS10625 (LY264_10625)2188782..2188985-204WP_003841645.1hypothetical protein-
LY264_RS10630 (LY264_10630)2188978..2189322-345WP_171845942.1hypothetical protein-
LY264_RS10635 (LY264_10635)2189357..2190448-1092WP_071692475.1RecT family recombinase-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideProphage--2181324..224943168107


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T236220 NZ_CP092466:2186981-2187084 [Citrobacter portucalensis]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 141 bp

>AT236220 NZ_CP092466:c2187086-2186946 [Citrobacter portucalensis]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References