Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1988299..1988439 | Replicon | chromosome |
| Accession | NZ_CP092461 | ||
| Organism | Serratia marcescens strain RH10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1988343..1988439 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1988299..1988439 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MJ023_RS09650 (MJ023_001914) | 1983568..1983963 | + | 396 | WP_243811201.1 | RidA family protein | - |
| MJ023_RS09655 (MJ023_001915) | 1984120..1985073 | + | 954 | WP_033641435.1 | prolyl aminopeptidase | - |
| MJ023_RS09660 (MJ023_001916) | 1985105..1985335 | - | 231 | WP_016928156.1 | DNA polymerase III subunit theta | - |
| MJ023_RS09665 (MJ023_001917) | 1985680..1986198 | + | 519 | WP_015377481.1 | non-heme ferritin | - |
| MJ023_RS09670 (MJ023_001918) | 1986491..1986907 | + | 417 | WP_042706245.1 | CopC domain-containing protein YobA | - |
| MJ023_RS09675 (MJ023_001919) | 1986910..1987791 | + | 882 | WP_048797011.1 | copper homeostasis membrane protein CopD | - |
| MJ023_RS09680 (MJ023_001920) | 1987861..1988201 | + | 341 | Protein_1873 | YebY family protein | - |
| - | 1988299..1988439 | - | 141 | - | - | Antitoxin |
| - | 1988343..1988439 | + | 97 | - | - | Toxin |
| MJ023_RS09685 (MJ023_001921) | 1988691..1989095 | + | 405 | WP_079451355.1 | hypothetical protein | - |
| MJ023_RS09690 (MJ023_001922) | 1989092..1989310 | - | 219 | WP_033640661.1 | hypothetical protein | - |
| MJ023_RS09695 (MJ023_001923) | 1989385..1989729 | - | 345 | WP_147881954.1 | hypothetical protein | - |
| MJ023_RS09700 (MJ023_001924) | 1989978..1990328 | + | 351 | WP_033640658.1 | DUF4377 domain-containing protein | - |
| MJ023_RS09705 (MJ023_001925) | 1990512..1991711 | + | 1200 | WP_016928134.1 | trans-2-enoyl-CoA reductase family protein | - |
| MJ023_RS09710 (MJ023_001926) | 1991938..1992156 | + | 219 | WP_033640657.1 | hypothetical protein | - |
| MJ023_RS09715 (MJ023_001927) | 1992328..1992633 | + | 306 | WP_016928132.1 | hypothetical protein | - |
| MJ023_RS09720 (MJ023_001928) | 1992682..1993017 | + | 336 | WP_016928131.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T236207 NZ_CP092461:1988343-1988439 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT236207 NZ_CP092461:c1988439-1988299 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
