Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2468387..2468468 | Replicon | chromosome |
| Accession | NZ_CP092460 | ||
| Organism | Dickeya fangzhongdai strain AP6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2468388..2468468 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2468387..2468468 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FXN80_RS10980 (FXN80_10980) | 2465560..2466561 | + | 1002 | WP_161130738.1 | DUF6453 family protein | - |
| FXN80_RS10985 (FXN80_10985) | 2466576..2467814 | + | 1239 | WP_161130737.1 | tail fiber domain-containing protein | - |
| FXN80_RS10990 (FXN80_10990) | 2468008..2468235 | - | 228 | WP_161130736.1 | hypothetical protein | - |
| - | 2468387..2468468 | + | 82 | - | - | Antitoxin |
| - | 2468388..2468468 | - | 81 | - | - | Toxin |
| FXN80_RS10995 (FXN80_10995) | 2468638..2468976 | - | 339 | WP_038918972.1 | YebY family protein | - |
| FXN80_RS11000 (FXN80_11000) | 2469518..2469934 | + | 417 | WP_237431813.1 | hypothetical protein | - |
| FXN80_RS11005 (FXN80_11005) | 2470278..2470526 | + | 249 | WP_038918974.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| FXN80_RS11010 (FXN80_11010) | 2470641..2472383 | - | 1743 | WP_107759325.1 | ABC transporter permease subunit | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2421679..2479121 | 57442 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T236194 NZ_CP092460:c2468468-2468388 [Dickeya fangzhongdai]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 82 bp
>AT236194 NZ_CP092460:2468387-2468468 [Dickeya fangzhongdai]
TAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TT
TAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TT
