Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2062533..2062676 | Replicon | chromosome |
| Accession | NZ_CP092442 | ||
| Organism | Citrobacter portucalensis strain Sb-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2062568..2062671 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2062533..2062676 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I9P40_RS09780 (I9P40_22220) | 2058980..2059642 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| I9P40_RS09785 (I9P40_22215) | 2059666..2060322 | - | 657 | WP_008785043.1 | carbon-nitrogen hydrolase family protein | - |
| I9P40_RS09790 (I9P40_22210) | 2060429..2060659 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| I9P40_RS09795 (I9P40_22205) | 2060803..2061177 | + | 375 | WP_003833799.1 | CopC domain-containing protein YobA | - |
| I9P40_RS09800 (I9P40_22200) | 2061181..2062053 | + | 873 | WP_198802425.1 | copper homeostasis membrane protein CopD | - |
| I9P40_RS09805 (I9P40_22195) | 2062074..2062412 | + | 339 | WP_167820031.1 | YebY family protein | - |
| - | 2062533..2062676 | - | 144 | - | - | Antitoxin |
| - | 2062568..2062671 | + | 104 | - | - | Toxin |
| I9P40_RS09810 (I9P40_22190) | 2062825..2063466 | + | 642 | WP_048235214.1 | protein-serine/threonine phosphatase | - |
| I9P40_RS09815 (I9P40_22185) | 2063467..2063658 | - | 192 | WP_003034941.1 | YebW family protein | - |
| I9P40_RS09820 (I9P40_22180) | 2063761..2063997 | - | 237 | WP_029139506.1 | YebV family protein | - |
| I9P40_RS09825 (I9P40_22175) | 2064098..2065486 | - | 1389 | WP_032944459.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T236100 NZ_CP092442:2062568-2062671 [Citrobacter portucalensis]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT236100 NZ_CP092442:c2062676-2062533 [Citrobacter portucalensis]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
