Detailed information of TA system TA023602

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/PIN(toxin)
• Location: 757105..757793
• Replicon: chromosome
• Accession: NC_012207
• Organism: Mycobacterium bovis BCG str. Tokyo 172

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: P9WFB2
• Locus tag: JTY_RS03485
• Protein ID: WP_003403386.1
• Coordinates: 757105..757542 (-)
• Length: 146 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: O06777
• Locus tag: JTY_RS03490
• Protein ID: WP_003911263.1
• Coordinates: 757539..757793 (-)
• Length: 85 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
JTY_RS03455	753356..754366	+	1011	WP_003911248.1	ABC transporter ATP-binding protein	-
JTY_RS03460	754754..755137	-	384	WP_003403365.1	ribonuclease VapC6	-
JTY_RS03465	755232..755387	-	156	WP_003403368.1	type II toxin-antitoxin system VapB family antitoxin	-
JTY_RS03470	755463..756179	-	717	WP_003403371.1	CPBP family intramembrane metalloprotease	-
JTY_RS03475	756455..756763	-	309	WP_003403376.1	type II toxin-antitoxin system PemK/MazF family toxin	-
JTY_RS03480	756750..756995	-	246	WP_003403381.1	ribbon-helix-helix protein, CopG family	-
JTY_RS03485	757105..757542	-	438	WP_003403386.1	type II toxin-antitoxin system VapC family toxin	Toxin
JTY_RS03490	757539..757793	-	255	WP_003911263.1	antitoxin VapB7	Antitoxin
JTY_RS03495	757907..760270	+	2364	WP_003403397.1	arylsulfatase AtsD	-
JTY_RS03500	760333..760659	+	327	WP_003403401.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
JTY_RS03505	760571..760909	+	339	WP_003403405.1	PIN domain-containing protein	-
JTY_RS03510	760906..761079	+	174	WP_003898549.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-126)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 146 a.a.
• Molecular weight: 15245.39 Da
• Isoelectric Point: 5.1865

>T23602 WP_003403386.1 NC_012207:c757542-757105 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAAALGRVTMPNCSRRYSPSIE
ATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADPAFADLSDVVHVIPDAAGMVSLLGDR

Nucleotide

• Length: 438 bp

>T23602 NC_012207:c757542-757105 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
ATGATAGTGCTCGACACCACCGTCCTCGTCTATGCCAAAGGCGCCGAGCATCCACTCCGCGATCCCTGCCGCGATCTCGT
CGCGGCAATCGCCGACGAACGCATCGCTGCGACCACCACCGCCGAGGTGATCCAGGAGTTCGTCCACGTACGCGCCCGCC
GGCGCGACCGCAGCGACGCCGCCGCGCTGGGCCGTGTGACTATGCCGAACTGCTCTCGCCGCTACTCACCATCAATCGAG
GCCACCTCGAAGCGCGGCCTGACGCTGTTCGAGACAACGCCAGGGCTTGAAGCCTGCGACGCGGTGCTCGCGGCGGTTGC
CGCAAGCGCCGGCGCGACCGCTCTTGTCTCGGCTGACCCGGCGTTCGCCGATCTGTCGGATGTCGTGCACGTCATTCCCG
ACGCGGCCGGGATGGTCAGCCTGCTCGGCGACCGCTGA

Antitoxin

Protein

• Length: 85 a.a.
• Molecular weight: 9450.99 Da
• Isoelectric Point: 11.7073

>AT23602 WP_003911263.1 NC_012207:c757793-757539 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
MSMRLAHRLQILLDDECHRRITAVARERGVPVATVVREAIDRGLVSPAGRRKSAGRRLLDAADMSVPEPRELKQELEALR
ARRG

Nucleotide

• Length: 255 bp

>AT23602 NC_012207:c757793-757539 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
ATGAGCATGCGTCTGGCGCATCGGCTCCAGATCCTGCTCGACGACGAGTGCCACCGCCGCATCACCGCGGTGGCGCGCGA
GCGAGGCGTCCCGGTCGCAACCGTCGTGCGTGAGGCCATTGATCGAGGCCTCGTCAGCCCCGCCGGTCGCCGCAAGTCCG
CGGGCAGGCGCCTGCTCGACGCCGCCGACATGTCCGTTCCCGAGCCGCGGGAGCTGAAGCAGGAACTCGAGGCCCTCCGG
GCGCGCCGCGGATGA

Structures

Toxin

• AlphaFold DB: A0A7U4BSW5

Antitoxin

• AlphaFold DB: A0A806JQG1