Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1626503..1626602 Replicon chromosome
Accession NZ_CP092373
Organism Pantoea sp. Z09

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1626503..1626602 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1626503..1626602 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MC269_RS07730 1621618..1623681 + 2064 WP_239954732.1 prolyl oligopeptidase family serine peptidase -
MC269_RS07735 1623675..1624343 - 669 WP_239954734.1 exodeoxyribonuclease X -
MC269_RS07740 1624347..1624577 - 231 WP_081142703.1 DNA polymerase III subunit theta -
MC269_RS07745 1624730..1625107 + 378 WP_239954735.1 copper homeostasis periplasmic binding protein CopC -
MC269_RS07750 1625111..1625986 + 876 WP_239954736.1 copper homeostasis membrane protein CopD -
MC269_RS07755 1626022..1626369 + 348 WP_081142708.1 YebY family protein -
- 1626503..1626602 + 100 - - Toxin
MC269_RS07760 1626964..1627140 + 177 WP_081142709.1 general stress protein -
MC269_RS07765 1627340..1627705 + 366 WP_081142710.1 anti-adapter protein IraP -
MC269_RS07770 1628108..1628965 + 858 WP_239954737.1 manganese catalase family protein -
MC269_RS07775 1629261..1629467 - 207 WP_081142712.1 hypothetical protein -
MC269_RS07780 1629856..1630503 + 648 WP_239954738.1 metallophosphoesterase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 100 bp

>T235996 NZ_CP092373:1626503-1626602 [Pantoea sp. Z09]
GCAAGGCGACATCGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCAACGAGCCATTTCCCTGGACCGAATACAGGA
ATCGTGTTCGGTCTTTTTTT

Antitoxin


Download         Length: 100 bp

>AT235996 NZ_CP092373:c1626602-1626503 [Pantoea sp. Z09]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCGTTGAGAGCCGTGCGCTAAAAGTTGGCATTAA
TGCAGGCGATGTCGCCTTGC

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References