Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VapB
Location 754754..755387 Replicon chromosome
Accession NC_012207
Organism Mycobacterium bovis BCG str. Tokyo 172

Toxin (Protein)


Gene name vapC Uniprot ID G0TQD6
Locus tag JTY_RS03460 Protein ID WP_003403365.1
Coordinates 754754..755137 (-) Length 128 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ56
Locus tag JTY_RS03465 Protein ID WP_003403368.1
Coordinates 755232..755387 (-) Length 52 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JTY_RS03435 750046..750582 + 537 WP_003403341.1 50S ribosomal protein L10 -
JTY_RS03440 750619..751011 + 393 WP_003403353.1 50S ribosomal protein L7/L12 -
JTY_RS03445 751004..751699 - 696 WP_003403355.1 TetR/AcrR family transcriptional regulator -
JTY_RS03450 751770..753275 + 1506 WP_003403360.1 carotenoid cleavage oxygenase -
JTY_RS03455 753356..754366 + 1011 WP_003911248.1 ABC transporter ATP-binding protein -
JTY_RS03460 754754..755137 - 384 WP_003403365.1 ribonuclease VapC6 Toxin
JTY_RS03465 755232..755387 - 156 WP_003403368.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
JTY_RS03470 755463..756179 - 717 WP_003403371.1 CPBP family intramembrane metalloprotease -
JTY_RS03475 756455..756763 - 309 WP_003403376.1 type II toxin-antitoxin system PemK/MazF family toxin -
JTY_RS03480 756750..756995 - 246 WP_003403381.1 ribbon-helix-helix protein, CopG family -
JTY_RS03485 757105..757542 - 438 WP_003403386.1 type II toxin-antitoxin system VapC family toxin -
JTY_RS03490 757539..757793 - 255 WP_003911263.1 antitoxin VapB7 -
JTY_RS03495 757907..760270 + 2364 WP_003403397.1 arylsulfatase AtsD -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Bacterial antitoxin of type II TA system, VapB

(3-44)


Sequences

Toxin        


Download         Length: 128 a.a.        Molecular weight: 13959.73 Da        Isoelectric Point: 6.0803

>T23599 WP_003403365.1 NC_012207:c755137-754754 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
MAAATTTGTHRGLELRAAQRAVGSCEPQRAEFCRSARNADEFDQMSRMFGDVYPDVPVPKSVWRWIDSAQHRLARAGAVG
ALSVVDLLICDTAAARGLVVLHDDADYELAERHLPDIRVRRVVSADD

Download         Length: 384 bp

>T23599 NC_012207:c755137-754754 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
TTGGCGGCTGCAACGACAACCGGAACCCACCGAGGCCTGGAACTCCGCGCTGCTCAGCGGGCCGTCGGGTCGTGCGAACC
GCAACGAGCCGAGTTCTGCCGATCAGCGCGGAATGCGGACGAGTTCGACCAGATGAGCCGGATGTTTGGTGACGTCTACC
CCGATGTGCCAGTGCCGAAATCCGTGTGGCGGTGGATCGATTCGGCACAGCACCGCCTCGCCCGGGCGGGAGCGGTGGGT
GCCCTGTCGGTTGTCGATCTGCTGATCTGCGACACTGCGGCGGCCAGGGGCCTAGTAGTCCTCCACGACGATGCCGACTA
CGAACTCGCAGAGCGTCACCTTCCCGACATCAGAGTGCGGAGGGTCGTCAGCGCCGACGACTAG

Antitoxin


Download         Length: 52 a.a.        Molecular weight: 5872.72 Da        Isoelectric Point: 5.7734

>AT23599 WP_003403368.1 NC_012207:c755387-755232 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
VSVTQIDLDDEALADVMRIAAVHTKKEAVNLAMRDYVERFRRIEALARSRE

Download         Length: 156 bp

>AT23599 NC_012207:c755387-755232 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
GTGTCGGTGACCCAGATCGACCTCGACGACGAAGCGCTGGCCGATGTGATGCGCATCGCCGCCGTGCACACAAAGAAGGA
AGCCGTGAACCTCGCGATGCGCGATTACGTCGAACGGTTTCGGCGCATCGAGGCCCTGGCCCGCTCGCGCGAGTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TQD6

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4BSF8

References