Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hicAB/HicA-HicB |
| Location | 1042258..1042912 | Replicon | chromosome |
| Accession | NZ_CP092283 | ||
| Organism | Marinobacter sp. M4C | ||
Toxin (Protein)
| Gene name | hicA | Uniprot ID | - |
| Locus tag | MIH16_RS04970 | Protein ID | WP_249007818.1 |
| Coordinates | 1042730..1042912 (-) | Length | 61 a.a. |
Antitoxin (Protein)
| Gene name | hicB | Uniprot ID | - |
| Locus tag | MIH16_RS04965 | Protein ID | WP_249007817.1 |
| Coordinates | 1042258..1042689 (-) | Length | 144 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MIH16_RS04930 (MIH16_04930) | 1037415..1038263 | - | 849 | WP_249007814.1 | glycosyltransferase family 2 protein | - |
| MIH16_RS04935 (MIH16_04935) | 1038284..1040254 | - | 1971 | WP_249007815.1 | hypothetical protein | - |
| MIH16_RS04940 (MIH16_04940) | 1040304..1040732 | - | 429 | WP_283164097.1 | pilin | - |
| MIH16_RS04950 (MIH16_04950) | 1040967..1041401 | - | 435 | WP_283164098.1 | pilin | - |
| MIH16_RS04960 (MIH16_04960) | 1041769..1042005 | - | 237 | WP_249007816.1 | hypothetical protein | - |
| MIH16_RS04965 (MIH16_04965) | 1042258..1042689 | - | 432 | WP_249007817.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
| MIH16_RS04970 (MIH16_04970) | 1042730..1042912 | - | 183 | WP_249007818.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
| MIH16_RS04975 (MIH16_04975) | 1043017..1043559 | - | 543 | WP_249007819.1 | hypothetical protein | - |
| MIH16_RS04980 (MIH16_04980) | 1043694..1043960 | + | 267 | WP_249007820.1 | YlcI/YnfO family protein | - |
| MIH16_RS04985 (MIH16_04985) | 1043957..1044256 | + | 300 | WP_249007821.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| MIH16_RS04990 (MIH16_04990) | 1044286..1044609 | + | 324 | Protein_972 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| MIH16_RS04995 (MIH16_04995) | 1044611..1044913 | + | 303 | WP_249007822.1 | XRE family transcriptional regulator | - |
| MIH16_RS05000 (MIH16_05000) | 1045031..1045411 | + | 381 | WP_249007823.1 | helix-turn-helix transcriptional regulator | - |
| MIH16_RS05005 (MIH16_05005) | 1045443..1045562 | - | 120 | Protein_975 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| MIH16_RS05010 (MIH16_05010) | 1045705..1045893 | + | 189 | Protein_976 | ATP-binding protein | - |
| MIH16_RS05015 (MIH16_05015) | 1046003..1046476 | - | 474 | WP_249007824.1 | outer membrane protein assembly factor BamE | - |
| MIH16_RS05020 (MIH16_05020) | 1046740..1047012 | - | 273 | WP_249007825.1 | type II toxin-antitoxin system YafQ family toxin | - |
| MIH16_RS05025 (MIH16_05025) | 1047012..1047269 | - | 258 | WP_249007826.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 61 a.a. Molecular weight: 6849.86 Da Isoelectric Point: 10.6217
>T235850 WP_249007818.1 NZ_CP092283:c1042912-1042730 [Marinobacter sp. M4C]
VTSDEVKKKLEKDGWELVRVNGSHHHFKHSTKPGLVTLPHPKSELPKGTLNNIWKQAGWK
VTSDEVKKKLEKDGWELVRVNGSHHHFKHSTKPGLVTLPHPKSELPKGTLNNIWKQAGWK
Download Length: 183 bp
>T235850 NZ_LR134406:c2801373-2801122 [Arachnia propionica]
GTGTCCATCAGCGCCAGCGAGGCCCGCAGGACGTTGTTCCCGCTCATCGAGCAGGTCAACGACGATCGCACTGCCGTCGA
GATCGTTTCCCGCAAGGGGAACGCCGTTCTCATGTCCGCCGATGAATACGCCGCGTGGCAGGAGACGGCCTACCTGTTCC
GTTCCCCCGCCAATGCCCGAAGGCTGCTCGACGCCTACGAGAGGGCCCGGGAAGGACGGAGCGAGGAACACGATCTCATC
CGGGAGGACTGA
GTGTCCATCAGCGCCAGCGAGGCCCGCAGGACGTTGTTCCCGCTCATCGAGCAGGTCAACGACGATCGCACTGCCGTCGA
GATCGTTTCCCGCAAGGGGAACGCCGTTCTCATGTCCGCCGATGAATACGCCGCGTGGCAGGAGACGGCCTACCTGTTCC
GTTCCCCCGCCAATGCCCGAAGGCTGCTCGACGCCTACGAGAGGGCCCGGGAAGGACGGAGCGAGGAACACGATCTCATC
CGGGAGGACTGA
Antitoxin
Download Length: 144 a.a. Molecular weight: 15809.86 Da Isoelectric Point: 5.6123
>AT235850 WP_249007817.1 NZ_CP092283:c1042689-1042258 [Marinobacter sp. M4C]
MRFPVALHTDDGKNYGVTVPDIPGCFSAGSNEDKALDNAREAILGHLELLAEFGEDIPTANSIAEHRTNADFEGAVWGFI
EIDVTPLLGKAEKINITVPRLVLRQIDRYVKEHPNEARSRSAFLSEAALERMRKSHDKAKTLA
MRFPVALHTDDGKNYGVTVPDIPGCFSAGSNEDKALDNAREAILGHLELLAEFGEDIPTANSIAEHRTNADFEGAVWGFI
EIDVTPLLGKAEKINITVPRLVLRQIDRYVKEHPNEARSRSAFLSEAALERMRKSHDKAKTLA
Download Length: 432 bp
>AT235850 NZ_LR134406:c2801120-2800866 [Arachnia propionica]
GTGCGCCTGGCGTGGGATCCCTCGGCCTGGGAGGATTACACGTACTGGCAGGCCGCGGATAGCCGGATTCTCAAGCGGAT
CAACGCGCTCATCGACACCTGCCTCCGCGATCCCTCCGGTGGGATCGGGAAACCCGAACAACTCAGGTATGGGGCACCCG
GGGCTTGGTCGCGTCGCATCACGGAGGAGCACCGGCTCGTGTATCTCGTCGACGGCGACGACCTGGTGATCCTCCAGGCC
CGGTACCACTACTGA
GTGCGCCTGGCGTGGGATCCCTCGGCCTGGGAGGATTACACGTACTGGCAGGCCGCGGATAGCCGGATTCTCAAGCGGAT
CAACGCGCTCATCGACACCTGCCTCCGCGATCCCTCCGGTGGGATCGGGAAACCCGAACAACTCAGGTATGGGGCACCCG
GGGCTTGGTCGCGTCGCATCACGGAGGAGCACCGGCTCGTGTATCTCGTCGACGGCGACGACCTGGTGATCCTCCAGGCC
CGGTACCACTACTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|