Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2317529..2318055 | Replicon | chromosome |
| Accession | NZ_CP092252 | ||
| Organism | Escherichia coli strain ISHS7 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | MF614_RS11400 | Protein ID | WP_000323025.1 |
| Coordinates | 2317768..2318055 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | MF614_RS11395 | Protein ID | WP_000534858.1 |
| Coordinates | 2317529..2317768 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MF614_RS11365 (2312865) | 2312865..2313354 | + | 490 | Protein_2229 | class I SAM-dependent methyltransferase | - |
| MF614_RS11370 (2313832) | 2313832..2314252 | + | 421 | Protein_2230 | hypothetical protein | - |
| MF614_RS11375 (2314908) | 2314908..2315957 | + | 1050 | Protein_2231 | ISNCY family transposase | - |
| MF614_RS11380 (2316078) | 2316078..2316227 | + | 150 | WP_011443592.1 | protein YdfW | - |
| MF614_RS11385 (2316664) | 2316664..2316996 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| MF614_RS11390 (2317199) | 2317199..2317504 | - | 306 | WP_001326990.1 | protein YdfV | - |
| MF614_RS11395 (2317529) | 2317529..2317768 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| MF614_RS11400 (2317768) | 2317768..2318055 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| MF614_RS11405 (2318127) | 2318127..2318282 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| MF614_RS11410 (2318499) | 2318499..2318750 | + | 252 | WP_000980994.1 | protein Rem | - |
| MF614_RS11415 (2318817) | 2318817..2319095 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| MF614_RS11420 (2319097) | 2319097..2320146 | + | 1050 | WP_129468630.1 | DUF968 domain-containing protein | - |
| MF614_RS11425 (2320160) | 2320160..2320912 | + | 753 | WP_001047135.1 | antitermination protein | - |
| MF614_RS11430 (2321190) | 2321190..2321279 | - | 90 | WP_122985911.1 | hypothetical protein | - |
| MF614_RS11435 (2321334) | 2321334..2321546 | - | 213 | WP_024172454.1 | cold shock-like protein CspF | - |
| MF614_RS11440 (2321845) | 2321845..2322060 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| MF614_RS11445 (2322424) | 2322424..2322594 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| MF614_RS11450 (2322814) | 2322814..2323029 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2292634..2360354 | 67720 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T235811 WP_000323025.1 NZ_CP092252:2317768-2318055 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T235811 NZ_LR134373:3375787-3375990 [Yersinia pseudotuberculosis]
ATGACAAAAACTGACTACCTGATGCGTTTAAGAAAATGTACGACTATCGATACGCTAGAACGTGTAATTGAAAAAAATAA
GTACGAACTTTCTGATGATGAACTGGAATTGTTTTACTCAGCTGCAGACCATCGCTTGGCTGAACTAACGATGAATAAGC
TTTATGATAAAATTCCACCTACTGTATGGCAACATGTGAAATAG
ATGACAAAAACTGACTACCTGATGCGTTTAAGAAAATGTACGACTATCGATACGCTAGAACGTGTAATTGAAAAAAATAA
GTACGAACTTTCTGATGATGAACTGGAATTGTTTTACTCAGCTGCAGACCATCGCTTGGCTGAACTAACGATGAATAAGC
TTTATGATAAAATTCCACCTACTGTATGGCAACATGTGAAATAG
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT235811 WP_000534858.1 NZ_CP092252:2317529-2317768 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT235811 NZ_LR134373:3375370-3375738 [Yersinia pseudotuberculosis]
ATGGATGAGTACTCGCCTAAGCGGCATGACATTGCCCAACTGAAGTTTCTATGTGAAAGCTTGTATGATGAAGGTATTGC
AACTCTTGGCGACAGCCATCATGGCTGGATAAATGACCCAACGTCGGCCATAAACCTTCAACTCAATGATTTGATCGAGC
ATATAGCTTCATTTGTGATGAGTTTTAAAATAAAATACCCGGATGGAAGCCAGCTTTCCGAGTTAGTGGAAGAATATTTA
GACGACACATATACTCTGTTTAGTAGTTATGGAATCAATGATCCTGAATTGCGTCGCTGGCAGAAAACCAAAGAGCATTT
ATTCAGACTTTTCTCAGGGGAATACGTATGTACCCTGATGAAAACTTAA
ATGGATGAGTACTCGCCTAAGCGGCATGACATTGCCCAACTGAAGTTTCTATGTGAAAGCTTGTATGATGAAGGTATTGC
AACTCTTGGCGACAGCCATCATGGCTGGATAAATGACCCAACGTCGGCCATAAACCTTCAACTCAATGATTTGATCGAGC
ATATAGCTTCATTTGTGATGAGTTTTAAAATAAAATACCCGGATGGAAGCCAGCTTTCCGAGTTAGTGGAAGAATATTTA
GACGACACATATACTCTGTTTAGTAGTTATGGAATCAATGATCCTGAATTGCGTCGCTGGCAGAAAACCAAAGAGCATTT
ATTCAGACTTTTCTCAGGGGAATACGTATGTACCCTGATGAAAACTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|