Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2039720..2039991 | Replicon | chromosome |
| Accession | NZ_CP092252 | ||
| Organism | Escherichia coli strain ISHS7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2039850..2039953 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2039720..2039991 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MF614_RS09965 | 2036275..2036937 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MF614_RS09970 | 2036961..2037617 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MF614_RS09975 | 2037719..2037949 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MF614_RS09980 | 2038088..2038462 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| MF614_RS09985 | 2038466..2039338 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| MF614_RS09990 | 2039351..2039692 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2039720..2039991 | - | 272 | - | - | Antitoxin |
| - | 2039850..2039953 | + | 104 | - | - | Toxin |
| MF614_RS09995 | 2040088..2040744 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| MF614_RS10000 | 2040745..2040936 | - | 192 | WP_001296140.1 | YebW family protein | - |
| MF614_RS10005 | 2041041..2041277 | - | 237 | WP_001295499.1 | YebV family protein | - |
| MF614_RS10010 | 2041395..2042834 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T235803 NZ_CP092252:2039850-2039953 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT235803 NZ_CP092252:c2039991-2039720 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
