Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/YafQ-RelB |
| Location | 1749393..1749936 | Replicon | chromosome |
| Accession | NZ_CP092106 | ||
| Organism | Vibrio sp. JC009 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | L3Q72_RS07985 | Protein ID | WP_275129427.1 |
| Coordinates | 1749664..1749936 (+) | Length | 91 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | L3Q72_RS07980 | Protein ID | WP_275129426.1 |
| Coordinates | 1749393..1749677 (+) | Length | 95 a.a. |
Genomic Context
Location: 1746242..1747648 (1407 bp)
Type: Others
Protein ID: WP_275132088.1
Type: Others
Protein ID: WP_275132088.1
Location: 1747869..1748552 (684 bp)
Type: Others
Protein ID: WP_275129424.1
Type: Others
Protein ID: WP_275129424.1
Location: 1749393..1749677 (285 bp)
Type: Antitoxin
Protein ID: WP_275129426.1
Type: Antitoxin
Protein ID: WP_275129426.1
Location: 1749664..1749936 (273 bp)
Type: Toxin
Protein ID: WP_275129427.1
Type: Toxin
Protein ID: WP_275129427.1
Location: 1752922..1753635 (714 bp)
Type: Others
Protein ID: WP_275129429.1
Type: Others
Protein ID: WP_275129429.1
Location: 1754274..1754636 (363 bp)
Type: Others
Protein ID: WP_275129430.1
Type: Others
Protein ID: WP_275129430.1
Location: 1744910..1745566 (657 bp)
Type: Others
Protein ID: WP_275129423.1
Type: Others
Protein ID: WP_275129423.1
Location: 1748527..1749168 (642 bp)
Type: Others
Protein ID: WP_275129425.1
Type: Others
Protein ID: WP_275129425.1
Location: 1749994..1752609 (2616 bp)
Type: Others
Protein ID: WP_275129428.1
Type: Others
Protein ID: WP_275129428.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L3Q72_RS07960 (L3Q72_07950) | 1744910..1745566 | - | 657 | WP_275129423.1 | multiheme c-type cytochrome | - |
| L3Q72_RS07965 (L3Q72_07955) | 1746242..1747648 | + | 1407 | WP_275132088.1 | ammonia-forming nitrite reductase cytochrome c552 subunit | - |
| L3Q72_RS07970 (L3Q72_07960) | 1747869..1748552 | + | 684 | WP_275129424.1 | hypothetical protein | - |
| L3Q72_RS07975 (L3Q72_07965) | 1748527..1749168 | - | 642 | WP_275129425.1 | hypothetical protein | - |
| L3Q72_RS07980 (L3Q72_07970) | 1749393..1749677 | + | 285 | WP_275129426.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| L3Q72_RS07985 (L3Q72_07975) | 1749664..1749936 | + | 273 | WP_275129427.1 | type II toxin-antitoxin system YafQ family toxin | Toxin |
| L3Q72_RS07990 (L3Q72_07980) | 1749994..1752609 | - | 2616 | WP_275129428.1 | DNA topoisomerase (ATP-hydrolyzing) subunit A | - |
| L3Q72_RS07995 (L3Q72_07985) | 1752922..1753635 | + | 714 | WP_275129429.1 | bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG | - |
| L3Q72_RS08000 (L3Q72_07990) | 1754274..1754636 | + | 363 | WP_275129430.1 | endonuclease domain-containing protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 91 a.a. Molecular weight: 10460.07 Da Isoelectric Point: 8.0643
>T235708 WP_275129427.1 NZ_CP092106:1749664-1749936 [Vibrio sp. JC009]
MYALEYSTQFKKDFKKVTKKPISDIMEVGYVVSKLQRGETLEEKFVDHPLTSNWAGFRDCHVKPDLVLIYRIEHSTLQLA
RIGTHSELFG
MYALEYSTQFKKDFKKVTKKPISDIMEVGYVVSKLQRGETLEEKFVDHPLTSNWAGFRDCHVKPDLVLIYRIEHSTLQLA
RIGTHSELFG
Download Length: 273 bp
>T235708 NZ_LR134331:2782666-2782926 [Lacticaseibacillus rhamnosus]
ATGATTAAAACCTGGACCGATGATGCTTGGGCGGACTACATGTATTGGCATGATCAAAACGACAAGCGGACAATCAAACG
AATTAATCAACTCATTCAAGCCATTGACCGTGACCCTTATAAAGGCATCGGAAAACCTGAGCCACTTAGATATGCGCTAA
CCGGAAAATGGTCACGTCGGATTGATCAGGAAAATCGCATCATCTACAGCATTGAAAAGAACCACATTAATATTTTCGCC
TGCCGCACTCACTACAGTTAA
ATGATTAAAACCTGGACCGATGATGCTTGGGCGGACTACATGTATTGGCATGATCAAAACGACAAGCGGACAATCAAACG
AATTAATCAACTCATTCAAGCCATTGACCGTGACCCTTATAAAGGCATCGGAAAACCTGAGCCACTTAGATATGCGCTAA
CCGGAAAATGGTCACGTCGGATTGATCAGGAAAATCGCATCATCTACAGCATTGAAAAGAACCACATTAATATTTTCGCC
TGCCGCACTCACTACAGTTAA
Antitoxin
Download Length: 95 a.a. Molecular weight: 10192.64 Da Isoelectric Point: 6.4764
>AT235708 WP_275129426.1 NZ_CP092106:1749393-1749677 [Vibrio sp. JC009]
MKTEMLSTRIDHDTKMAFTQICDDVGLSPSQALKLFAKAVINHGGIPFEIKAPQPNTTTVQAMEELAQGKGHKAESVDAL
ISELTDSKVSHVRS
MKTEMLSTRIDHDTKMAFTQICDDVGLSPSQALKLFAKAVINHGGIPFEIKAPQPNTTTVQAMEELAQGKGHKAESVDAL
ISELTDSKVSHVRS
Download Length: 285 bp
>AT235708 NZ_LR134331:2782404-2782673 [Lacticaseibacillus rhamnosus]
ATGGAAGCAACGAATTATAGTGATTTCCGCCGCAACCTTAAGCATTATATGAGTCAAGTCAACGAAGACGCCGAACCGCT
ACTGGTTACCGCTAAAGATGATGATGACAATGTGGTGGTTATGAGCAAGCACGATTTTGACGCCATCGAAGAAACCCTGT
ATTTACTCAGCAATCCCAAGCTGATGGCCAAAATCAAACGTGGTGATGCCCAAATTGCCGCTGGAAAGGCTAAACAGCAC
GAGTTGTTAACGGACTTCGATCATGATTAA
ATGGAAGCAACGAATTATAGTGATTTCCGCCGCAACCTTAAGCATTATATGAGTCAAGTCAACGAAGACGCCGAACCGCT
ACTGGTTACCGCTAAAGATGATGATGACAATGTGGTGGTTATGAGCAAGCACGATTTTGACGCCATCGAAGAAACCCTGT
ATTTACTCAGCAATCCCAAGCTGATGGCCAAAATCAAACGTGGTGATGCCCAAATTGCCGCTGGAAAGGCTAAACAGCAC
GAGTTGTTAACGGACTTCGATCATGATTAA