Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 473306..473834 Replicon chromosome
Accession NZ_CP092106
Organism Vibrio sp. JC009

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag L3Q72_RS02325 Protein ID WP_275131074.1
Coordinates 473544..473834 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag L3Q72_RS02320 Protein ID WP_275131073.1
Coordinates 473306..473554 (+) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
L3Q72_RS02305 (L3Q72_02300) 469339..470352 + 1014 WP_275131070.1 Fe(3+) ABC transporter substrate-binding protein -
L3Q72_RS02310 (L3Q72_02305) 470352..471980 + 1629 WP_275131071.1 iron ABC transporter permease -
L3Q72_RS02315 (L3Q72_02310) 471980..473011 + 1032 WP_275131072.1 ABC transporter ATP-binding protein -
L3Q72_RS02320 (L3Q72_02315) 473306..473554 + 249 WP_275131073.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
L3Q72_RS02325 (L3Q72_02320) 473544..473834 + 291 WP_275131074.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
L3Q72_RS02330 (L3Q72_02325) 473923..475335 - 1413 WP_275131075.1 phosphoglucomutase/phosphomannomutase family protein -
L3Q72_RS02335 (L3Q72_02330) 475347..477752 - 2406 WP_275131076.1 N,N'-diacetylchitobiose phosphorylase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-86)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11228.21 Da        Isoelectric Point: 10.6832

>T235704 WP_275131074.1 NZ_CP092106:473544-473834 [Vibrio sp. JC009]
MTYKLDFKKSALKEWKKLGSTLQQQFKKKLIERLDNPHVPASKLSGADNLYKIKLRQSGYRLVYKVEDNVIVVTVLAVGK
RERSDVYRKAMKRLDD

Download         Length: 291 bp

>T235704 NZ_LR134330:c6545287-6544532 [Pseudomonas aeruginosa]
GTGAGCGAGATCTGGCGACAGTGCAAGGGTGAGCGGCATGTCCGACCGCTCCAGGGGCGGCTGGTGCGGTTGGTGGAGAG
CCAGGAGCAGGTGGCGACCCTGCAATTGGTCGACACCCTGGAAGAACAGGCGTTGCTCGAGGAACTGCTCGAGTCGAGCA
AGCCGCCGGTGCCGGCGGATGCCGAGCCATTGCATTACCTGTTGAAGACCCCGTTCCGTTATCCGCCCTTGCGTTGGGGG
TCGCGGTTTGGCCGTCGTCACGAGCCAAGCCTGTTCTACGCCGCGTTGAAGCTGGAAACGGCCATGGCCGAAAGCGCGTA
TTACCGTTGTGTCCTGTGGAGTGGCATGGCGGTGCCGCCACCGAGCGGGAGGATTCTGTCCGAGCACGCTTCGTTCGAGG
CGGGCTGGAAGGTGGAGCGGGGAATCCGTCTGCAGGCGCCGCCTTTCTCCGATCACGAGGCTGCGCTGACCGACATCGCC
GACTACCGCGCTCCCCAGGAACTGGGAAGTGCCATGCGCAGCGCCGGGGTGCAGGCATTCGAATACCGTTCGGCGCGTTG
CCCGGAGCGCGGCTGCAATGTCGCCCTGTTCACGCCCGCGGCCTTCACCGAAAAGCGTCCTCGCAACCTGACGCCCTGGC
TGTGCGAAACCACGGCCGGTTACGTGGCCTTCAAGCCGGCGCATGTGCCGGGGTCGCCGAAAATCTTCTCCTGGGAGCTG
TTCCTGGTGGACGGAAAGTTGCCGCATCCGGCGTGA

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9007.26 Da        Isoelectric Point: 3.8548

>AT235704 WP_275131073.1 NZ_CP092106:473306-473554 [Vibrio sp. JC009]
MTARILADVAASITELKANPMKVASSAYGEPVAVLNRNEPAFYCVPAEAYEMMMDKLEDLELLAIAQERESEESISVNID
DL

Download         Length: 249 bp

>AT235704 NZ_LR134330:c6545790-6545422 [Pseudomonas aeruginosa]
ATGAGCGCTCTCATCAAGGAACGTCCCAGCGCCGATGCTGTCCTGGCCAAGGCCGTCCTGGCCGCGCGCGAGCAATTGGG
GCTGACGCAGCTCGAACTGGCCGGCATCGTCGGCGTCGATCGCAGCGCCATCAGCCGCTGGAAGACCCAGGGCCTGCGGG
TGGACAGCAAGACCGGCGAGCTGGCTCTGCTGCTGGTGCGGGTCTATCGCGCACTGTATGCCCTGTTCGGCGGGCAGCAG
GAGGACATGCGCCACTTCCTGCGCACTCCCAACCATCACCTGGCGGGCGAGCCGCTGGCACTGATGGGACAGGTGCAGGG
CCTGGTTCATGTGCTGGAATACCTCGATGCGATCCGCGGCAAGGTCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References