Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/VapC-VagC |
| Location | 1114862..1115493 | Replicon | chromosome |
| Accession | NZ_CP092104 | ||
| Organism | Flagellatimonas centrodinii strain R2A-3 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | - |
| Locus tag | JN531_RS05320 | Protein ID | WP_228347822.1 |
| Coordinates | 1114862..1115263 (-) | Length | 134 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | - |
| Locus tag | JN531_RS05325 | Protein ID | WP_228347823.1 |
| Coordinates | 1115263..1115493 (-) | Length | 77 a.a. |
Genomic Context
Location: 1113947..1114813 (867 bp)
Type: Others
Protein ID: WP_228347821.1
Type: Others
Protein ID: WP_228347821.1
Location: 1115789..1116028 (240 bp)
Type: Others
Protein ID: WP_228347824.1
Type: Others
Protein ID: WP_228347824.1
Location: 1116256..1116600 (345 bp)
Type: Others
Protein ID: WP_239795350.1
Type: Others
Protein ID: WP_239795350.1
Location: 1116587..1116880 (294 bp)
Type: Others
Protein ID: WP_228347826.1
Type: Others
Protein ID: WP_228347826.1
Location: 1110779..1111858 (1080 bp)
Type: Others
Protein ID: WP_228347817.1
Type: Others
Protein ID: WP_228347817.1
Location: 1111921..1112406 (486 bp)
Type: Others
Protein ID: WP_228347818.1
Type: Others
Protein ID: WP_228347818.1
Location: 1112396..1112794 (399 bp)
Type: Others
Protein ID: WP_228347819.1
Type: Others
Protein ID: WP_228347819.1
Location: 1112944..1113819 (876 bp)
Type: Others
Protein ID: WP_228347820.1
Type: Others
Protein ID: WP_228347820.1
Location: 1114862..1115263 (402 bp)
Type: Toxin
Protein ID: WP_228347822.1
Type: Toxin
Protein ID: WP_228347822.1
Location: 1115263..1115493 (231 bp)
Type: Antitoxin
Protein ID: WP_228347823.1
Type: Antitoxin
Protein ID: WP_228347823.1
Location: 1117120..1117719 (600 bp)
Type: Others
Protein ID: WP_228347827.1
Type: Others
Protein ID: WP_228347827.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JN531_RS05295 (JN531_005295) | 1110779..1111858 | - | 1080 | WP_228347817.1 | alkene reductase | - |
| JN531_RS05300 (JN531_005300) | 1111921..1112406 | - | 486 | WP_228347818.1 | hypothetical protein | - |
| JN531_RS05305 (JN531_005305) | 1112396..1112794 | - | 399 | WP_228347819.1 | hypothetical protein | - |
| JN531_RS05310 (JN531_005310) | 1112944..1113819 | - | 876 | WP_228347820.1 | hypothetical protein | - |
| JN531_RS05315 (JN531_005315) | 1113947..1114813 | + | 867 | WP_228347821.1 | TauD/TfdA family dioxygenase | - |
| JN531_RS05320 (JN531_005320) | 1114862..1115263 | - | 402 | WP_228347822.1 | tRNA(fMet)-specific endonuclease VapC | Toxin |
| JN531_RS05325 (JN531_005325) | 1115263..1115493 | - | 231 | WP_228347823.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin |
| JN531_RS05330 (JN531_005330) | 1115789..1116028 | + | 240 | WP_228347824.1 | hypothetical protein | - |
| JN531_RS05335 (JN531_005335) | 1116256..1116600 | + | 345 | WP_239795350.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| JN531_RS05340 (JN531_005340) | 1116587..1116880 | + | 294 | WP_228347826.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JN531_RS05345 (JN531_005345) | 1117120..1117719 | - | 600 | WP_228347827.1 | porin family protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 134 a.a. Molecular weight: 14725.84 Da Isoelectric Point: 7.4735
>T235699 WP_228347822.1 NZ_CP092104:c1115263-1114862 [Flagellatimonas centrodinii]
MLRYLLDTNLCIETIRHRPAGLRAAFNRHHGHMGISAVTVMELLYGVELSAQTQRNLADVEGFIARLDVLDYDAAAAAHT
AQIRAELKVAGTQIGPYDQMIAGHARSRGLVVVTNNTKEFQRVAGLRIEDWTT
MLRYLLDTNLCIETIRHRPAGLRAAFNRHHGHMGISAVTVMELLYGVELSAQTQRNLADVEGFIARLDVLDYDAAAAAHT
AQIRAELKVAGTQIGPYDQMIAGHARSRGLVVVTNNTKEFQRVAGLRIEDWTT
Download Length: 402 bp
>T235699 NZ_LR134330:c718018-717740 [Pseudomonas aeruginosa]
ATGATTCTGACCTTTCGCTGCGACGAGACTCGTCAGCTTTTTGAGACGGGTCTTTCGAGGCGGTGGGGAGCGATCCTCAC
AGTCGCTACGCGTAAGCTCGCAATGCATCATGCGGCTACGGAGCTTCGAGACTTGCGCTCTCCACCTGGAAACCGGTTGG
AGCCGTTGCAGGGAAAGCGGGTGGGCCAACATAGCATCAGGATCAATGACCAGTGGCGTGTCTGTTTCGTCTGGACGGAT
GCGGGTCCCGAAGAAGTCGAAATAGTTGATTACCACTGA
ATGATTCTGACCTTTCGCTGCGACGAGACTCGTCAGCTTTTTGAGACGGGTCTTTCGAGGCGGTGGGGAGCGATCCTCAC
AGTCGCTACGCGTAAGCTCGCAATGCATCATGCGGCTACGGAGCTTCGAGACTTGCGCTCTCCACCTGGAAACCGGTTGG
AGCCGTTGCAGGGAAAGCGGGTGGGCCAACATAGCATCAGGATCAATGACCAGTGGCGTGTCTGTTTCGTCTGGACGGAT
GCGGGTCCCGAAGAAGTCGAAATAGTTGATTACCACTGA
Antitoxin
Download Length: 77 a.a. Molecular weight: 8308.25 Da Isoelectric Point: 4.7247
>AT235699 WP_228347823.1 NZ_CP092104:c1115493-1115263 [Flagellatimonas centrodinii]
MEQGAVFKSNRSQAIRLSKAAALPDDVKRVDVVSIGRTRIITPAGEAWDSWFEGAGVSADYLAEREQPAAQERDAF
MEQGAVFKSNRSQAIRLSKAAALPDDVKRVDVVSIGRTRIITPAGEAWDSWFEGAGVSADYLAEREQPAAQERDAF
Download Length: 231 bp
>AT235699 NZ_LR134330:c717728-717423 [Pseudomonas aeruginosa]
ATGGCTACCAATGGTATGCGCCCCATCCATCCTGGGGAAATATTACGCGATGAGTTTCTGATGGAGTTGGATATCTCTCC
AGCTGCCCTAGCACGCGCTTTGAAAGTCTCCGCTCCGACAGTGAACGATATCGTTCGTGAGCAGCGTGGTATCTCCGCAG
ATATGGCGATTCGTCTGGGGCGTTACTTTGATACGTCCGCTCAGTTCTGGATGAATCTCCAGAGTGAGTACTCGTTAGCA
ACTGCTTATGCGGCGAATGGCGAGCAGATCGAACATGAGATTGAGCCGCTGCTTGCTCACGGATAG
ATGGCTACCAATGGTATGCGCCCCATCCATCCTGGGGAAATATTACGCGATGAGTTTCTGATGGAGTTGGATATCTCTCC
AGCTGCCCTAGCACGCGCTTTGAAAGTCTCCGCTCCGACAGTGAACGATATCGTTCGTGAGCAGCGTGGTATCTCCGCAG
ATATGGCGATTCGTCTGGGGCGTTACTTTGATACGTCCGCTCAGTTCTGGATGAATCTCCAGAGTGAGTACTCGTTAGCA
ACTGCTTATGCGGCGAATGGCGAGCAGATCGAACATGAGATTGAGCCGCTGCTTGCTCACGGATAG