Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1886418..1886563 | Replicon | chromosome |
| Accession | NZ_CP092077 | ||
| Organism | Klebsiella pneumoniae strain P1-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1886454..1886556 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1886418..1886563 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MDE60_RS09030 (MDE60_09020) | 1881548..1883608 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| MDE60_RS09035 (MDE60_09025) | 1883612..1884271 | - | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| MDE60_RS09040 (MDE60_09030) | 1884350..1884580 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MDE60_RS09045 (MDE60_09035) | 1884693..1885067 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MDE60_RS09050 (MDE60_09040) | 1885071..1885940 | + | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| MDE60_RS09055 (MDE60_09045) | 1885957..1886295 | + | 339 | WP_180812522.1 | YebY family protein | - |
| - | 1886418..1886563 | - | 146 | - | - | Antitoxin |
| - | 1886454..1886556 | + | 103 | - | - | Toxin |
| MDE60_RS09060 (MDE60_09050) | 1886931..1887074 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MDE60_RS09065 (MDE60_09055) | 1887179..1888147 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| MDE60_RS09070 (MDE60_09060) | 1888304..1888957 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| MDE60_RS09075 (MDE60_09065) | 1888954..1889145 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MDE60_RS09080 (MDE60_09070) | 1889243..1889482 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MDE60_RS09085 (MDE60_09075) | 1889598..1891031 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T235678 NZ_CP092077:1886454-1886556 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT235678 NZ_CP092077:c1886563-1886418 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
