Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2901912..2902055 | Replicon | chromosome |
| Accession | NZ_CP092042 | ||
| Organism | Enterobacter cloacae isolate AVS0889 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2901917..2902020 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2901912..2902055 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MBA36_RS13880 (MBA36_13880) | 2897072..2897311 | + | 240 | WP_013096113.1 | YebV family protein | - |
| MBA36_RS13885 (MBA36_13885) | 2897345..2897989 | - | 645 | WP_013096112.1 | protein-serine/threonine phosphatase | - |
| MBA36_RS13890 (MBA36_13890) | 2898156..2899097 | + | 942 | WP_013096111.1 | VirK/YbjX family protein | - |
| MBA36_RS13895 (MBA36_13895) | 2899887..2900735 | + | 849 | WP_062934752.1 | benzoate transporter | - |
| - | 2901912..2902055 | + | 144 | - | - | Antitoxin |
| - | 2901917..2902020 | - | 104 | - | - | Toxin |
| MBA36_RS13900 (MBA36_13900) | 2902160..2902498 | - | 339 | WP_013096105.1 | YebY family protein | - |
| MBA36_RS13905 (MBA36_13905) | 2902515..2903384 | - | 870 | WP_013096104.1 | copper homeostasis membrane protein CopD | - |
| MBA36_RS13910 (MBA36_13910) | 2903386..2903757 | - | 372 | WP_013096103.1 | CopC domain-containing protein YobA | - |
| MBA36_RS13915 (MBA36_13915) | 2903895..2904125 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| MBA36_RS13920 (MBA36_13920) | 2904235..2904885 | + | 651 | WP_013096101.1 | carbon-nitrogen hydrolase family protein | - |
| MBA36_RS13925 (MBA36_13925) | 2904909..2905571 | + | 663 | WP_013096100.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T235579 NZ_CP092042:c2902020-2901917 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT235579 NZ_CP092042:2901912-2902055 [Enterobacter cloacae]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
