Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1887743..1888011 | Replicon | chromosome |
| Accession | NC_011993 | ||
| Organism | Escherichia coli LF82 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1887781..1887883 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1887743..1888011 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LF82_RS09550 | 1884900..1886339 | + | 1440 | WP_024190479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LF82_RS09555 | 1886457..1886693 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| LF82_RS09560 | 1886798..1886989 | + | 192 | WP_001317886.1 | YebW family protein | - |
| LF82_RS09565 | 1886990..1887646 | - | 657 | WP_000812746.1 | protein-serine/threonine phosphatase | - |
| - | 1887743..1888011 | + | 269 | - | - | Antitoxin |
| - | 1887781..1887883 | - | 103 | - | - | Toxin |
| LF82_RS09575 | 1888041..1888382 | - | 342 | WP_000976472.1 | YebY family protein | - |
| LF82_RS09580 | 1888395..1889267 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| LF82_RS09585 | 1889271..1889645 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LF82_RS09590 | 1889784..1890014 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LF82_RS09595 | 1890116..1890772 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| LF82_RS09600 | 1890795..1891457 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T23546 NC_011993:c1887883-1887781 [Escherichia coli LF82]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT23546 NC_011993:1887743-1888011 [Escherichia coli LF82]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
