Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2751973..2752118 | Replicon | chromosome |
| Accession | NZ_CP091992 | ||
| Organism | Klebsiella pneumoniae strain NB04 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2751980..2752082 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2751973..2752118 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MA881_RS16350 | 2747505..2748938 | + | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MA881_RS16355 | 2749054..2749293 | + | 240 | WP_002911393.1 | YebV family protein | - |
| MA881_RS16360 | 2749391..2749582 | + | 192 | WP_002911395.1 | YebW family protein | - |
| MA881_RS16365 | 2749579..2750232 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| MA881_RS16370 | 2750389..2751357 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| MA881_RS16375 | 2751462..2751605 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2751973..2752118 | + | 146 | - | - | Antitoxin |
| - | 2751980..2752082 | - | 103 | - | - | Toxin |
| MA881_RS16380 | 2752241..2752579 | - | 339 | WP_016529031.1 | YebY family protein | - |
| MA881_RS16385 | 2752596..2753465 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| MA881_RS16390 | 2753469..2753843 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MA881_RS16395 | 2753956..2754186 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MA881_RS16400 | 2754265..2754924 | + | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| MA881_RS16405 | 2754928..2756988 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T235349 NZ_CP091992:c2752082-2751980 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT235349 NZ_CP091992:2751973-2752118 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
