Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1998385..1998656 | Replicon | chromosome |
| Accession | NZ_CP091925 | ||
| Organism | Escherichia coli strain JNQH497 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1998515..1998618 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1998385..1998656 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KIF99_RS09675 | 1994940..1995602 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KIF99_RS09680 | 1995626..1996282 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KIF99_RS09685 | 1996384..1996614 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KIF99_RS09690 | 1996753..1997127 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KIF99_RS09695 | 1997131..1998003 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| KIF99_RS09700 | 1998016..1998357 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1998385..1998656 | - | 272 | - | - | Antitoxin |
| - | 1998515..1998618 | + | 104 | - | - | Toxin |
| KIF99_RS09705 | 1998753..1999289 | + | 537 | Protein_1903 | protein-serine/threonine phosphatase | - |
| KIF99_RS09715 | 2000058..2000186 | + | 129 | Protein_1905 | serine/threonine-protein phosphatase | - |
| KIF99_RS09720 | 2000187..2000378 | - | 192 | WP_000457842.1 | YebW family protein | - |
| KIF99_RS09725 | 2000483..2000719 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KIF99_RS09730 | 2000837..2002276 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T235254 NZ_CP091925:1998515-1998618 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT235254 NZ_CP091925:c1998656-1998385 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
