Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1953371..1953516 | Replicon | chromosome |
| Accession | NZ_CP091846 | ||
| Organism | Klebsiella pneumoniae strain NB05 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1953407..1953509 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1953371..1953516 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L7D54_RS09485 | 1948501..1950561 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| L7D54_RS09490 | 1950565..1951224 | - | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| L7D54_RS09495 | 1951303..1951533 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| L7D54_RS09500 | 1951646..1952020 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| L7D54_RS09505 | 1952024..1952893 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| L7D54_RS09510 | 1952910..1953248 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1953371..1953516 | - | 146 | - | - | Antitoxin |
| - | 1953407..1953509 | + | 103 | - | - | Toxin |
| L7D54_RS09515 | 1953884..1954027 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| L7D54_RS09520 | 1954132..1955100 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| L7D54_RS09525 | 1955257..1955910 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| L7D54_RS09530 | 1955907..1956098 | - | 192 | WP_002911395.1 | YebW family protein | - |
| L7D54_RS09535 | 1956196..1956435 | - | 240 | WP_002911393.1 | YebV family protein | - |
| L7D54_RS09540 | 1956551..1957984 | - | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T234882 NZ_CP091846:1953407-1953509 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT234882 NZ_CP091846:c1953516-1953371 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
