Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 980983..981254 Replicon chromosome
Accession NZ_CP091839
Organism Escherichia coli strain SWYHX138.261ft

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 981021..981124 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 980983..981254 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
L7H22_RS04755 978140..979579 + 1440 WP_001352260.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
L7H22_RS04760 979697..979933 + 237 WP_001295499.1 YebV family protein -
L7H22_RS04765 980038..980229 + 192 WP_000457842.1 YebW family protein -
L7H22_RS04770 980230..980886 - 657 WP_238059155.1 protein-serine/threonine phosphatase -
- 980983..981254 + 272 - - Antitoxin
- 981021..981124 - 104 - - Toxin
L7H22_RS04775 981282..981623 - 342 WP_000976476.1 YebY family protein -
L7H22_RS04780 981636..982508 - 873 WP_000879289.1 copper homeostasis membrane protein CopD -
L7H22_RS04785 982512..982886 - 375 WP_000168747.1 CopC domain-containing protein YobA -
L7H22_RS04790 983025..983255 + 231 WP_000916763.1 DNA polymerase III subunit theta -
L7H22_RS04795 983357..984013 + 657 WP_000011658.1 carbon-nitrogen hydrolase family protein YobB -
L7H22_RS04800 984037..984699 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T234858 NZ_CP091839:c981124-981021 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT234858 NZ_CP091839:980983-981254 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References