Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 980114..980385 | Replicon | chromosome |
| Accession | NZ_CP091836 | ||
| Organism | Escherichia coli strain SWYHX138.33gt | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 980152..980255 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 980114..980385 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L7H17_RS04750 | 977271..978710 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L7H17_RS04755 | 978828..979064 | + | 237 | WP_001295499.1 | YebV family protein | - |
| L7H17_RS04760 | 979169..979360 | + | 192 | WP_000457842.1 | YebW family protein | - |
| L7H17_RS04765 | 979361..980017 | - | 657 | WP_238059155.1 | protein-serine/threonine phosphatase | - |
| - | 980114..980385 | + | 272 | - | - | Antitoxin |
| - | 980152..980255 | - | 104 | - | - | Toxin |
| L7H17_RS04770 | 980413..980754 | - | 342 | WP_000976476.1 | YebY family protein | - |
| L7H17_RS04775 | 980767..981639 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| L7H17_RS04780 | 981643..982017 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| L7H17_RS04785 | 982156..982386 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| L7H17_RS04790 | 982488..983144 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L7H17_RS04795 | 983168..983830 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T234836 NZ_CP091836:c980255-980152 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT234836 NZ_CP091836:980114-980385 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
