Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1861201..1861348 | Replicon | chromosome |
| Accession | NZ_CP091805 | ||
| Organism | Klebsiella quasipneumoniae strain 21223 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1861242..1861344 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1861201..1861348 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L7H25_RS08925 | 1856336..1858396 | + | 2061 | WP_065904503.1 | oligopeptidase B | - |
| L7H25_RS08930 | 1858400..1859059 | - | 660 | WP_065904507.1 | exodeoxyribonuclease X | - |
| L7H25_RS08935 | 1859138..1859368 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| L7H25_RS08940 | 1859481..1859855 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| L7H25_RS08945 | 1859859..1860728 | + | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| L7H25_RS08950 | 1860745..1861083 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1861201..1861348 | - | 148 | - | - | Antitoxin |
| - | 1861242..1861344 | + | 103 | - | - | Toxin |
| L7H25_RS08955 | 1861732..1861875 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| L7H25_RS08960 | 1861979..1862947 | - | 969 | WP_065904512.1 | VirK/YbjX family protein | - |
| L7H25_RS08965 | 1863104..1863757 | + | 654 | WP_004203382.1 | protein-serine/threonine phosphatase | - |
| L7H25_RS08970 | 1863754..1863945 | - | 192 | WP_002911395.1 | YebW family protein | - |
| L7H25_RS08975 | 1864043..1864282 | - | 240 | WP_002911393.1 | YebV family protein | - |
| L7H25_RS08980 | 1864399..1865832 | - | 1434 | WP_017900211.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T234789 NZ_CP091805:1861242-1861344 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT234789 NZ_CP091805:c1861348-1861201 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
