Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2745983..2746126 | Replicon | chromosome |
| Accession | NZ_CP091779 | ||
| Organism | Enterobacter mori strain ACYC.E9L | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2745988..2746091 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2745983..2746126 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6Y89_RS12925 (L6Y89_12925) | 2742256..2743698 | + | 1443 | WP_237844213.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L6Y89_RS12930 (L6Y89_12930) | 2743803..2744042 | + | 240 | WP_042717979.1 | YebV family protein | - |
| L6Y89_RS12935 (L6Y89_12935) | 2744077..2744715 | - | 639 | WP_237844214.1 | protein-serine/threonine phosphatase | - |
| L6Y89_RS12940 (L6Y89_12940) | 2744883..2745863 | + | 981 | WP_237844215.1 | VirK/YbjX family protein | - |
| - | 2745983..2746126 | + | 144 | - | - | Antitoxin |
| - | 2745988..2746091 | - | 104 | - | - | Toxin |
| L6Y89_RS12945 (L6Y89_12945) | 2746230..2746568 | - | 339 | WP_010432621.1 | YebY family protein | - |
| L6Y89_RS12950 (L6Y89_12950) | 2746585..2747454 | - | 870 | WP_237844216.1 | copper homeostasis membrane protein CopD | - |
| L6Y89_RS12955 (L6Y89_12955) | 2747456..2747827 | - | 372 | WP_237848134.1 | CopC domain-containing protein YobA | - |
| L6Y89_RS12960 (L6Y89_12960) | 2747965..2748195 | + | 231 | WP_010432616.1 | DNA polymerase III subunit theta | - |
| L6Y89_RS12965 (L6Y89_12965) | 2748306..2748956 | + | 651 | WP_237844217.1 | carbon-nitrogen hydrolase family protein | - |
| L6Y89_RS12970 (L6Y89_12970) | 2748981..2749643 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T234768 NZ_CP091779:c2746091-2745988 [Enterobacter mori]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT234768 NZ_CP091779:2745983-2746126 [Enterobacter mori]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
