Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2067728..2067896 | Replicon | chromosome |
| Accession | NZ_CP091752 | ||
| Organism | Klebsiella grimontii strain LC-1303-2020 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2067786..2067889 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2067728..2067896 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6506_RS09770 (L6506_09770) | 2062855..2064915 | + | 2061 | WP_064342867.1 | oligopeptidase B | - |
| L6506_RS09775 (L6506_09775) | 2064922..2065581 | - | 660 | WP_241449869.1 | exodeoxyribonuclease X | - |
| L6506_RS09780 (L6506_09780) | 2065660..2065890 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| L6506_RS09785 (L6506_09785) | 2066026..2066400 | + | 375 | WP_004134817.1 | CopC domain-containing protein YobA | - |
| L6506_RS09790 (L6506_09790) | 2066405..2067274 | + | 870 | WP_004134819.1 | copper homeostasis membrane protein CopD | - |
| L6506_RS09795 (L6506_09795) | 2067291..2067629 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2067728..2067896 | - | 169 | - | - | Antitoxin |
| - | 2067786..2067889 | + | 104 | - | - | Toxin |
| L6506_RS09800 (L6506_09800) | 2068014..2068973 | - | 960 | WP_049085573.1 | spore coat protein U domain-containing protein | - |
| L6506_RS09805 (L6506_09805) | 2068988..2071318 | - | 2331 | WP_181247125.1 | fimbria/pilus outer membrane usher protein | - |
| L6506_RS09810 (L6506_09810) | 2071321..2072085 | - | 765 | WP_004134823.1 | fimbria/pilus periplasmic chaperone | - |
| L6506_RS09815 (L6506_09815) | 2072104..2072622 | - | 519 | WP_049099811.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T234684 NZ_CP091752:2067786-2067889 [Klebsiella grimontii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT234684 NZ_CP091752:c2067896-2067728 [Klebsiella grimontii]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
