Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1997156..1997427 | Replicon | chromosome |
| Accession | NZ_CP091712 | ||
| Organism | Escherichia coli strain KFu014 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1997287..1997389 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1997156..1997427 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6L57_RS09550 | 1993711..1994373 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| L6L57_RS09555 | 1994397..1995053 | - | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L6L57_RS09560 | 1995155..1995385 | - | 231 | WP_024176156.1 | DNA polymerase III subunit theta | - |
| L6L57_RS09565 | 1995524..1995898 | + | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| L6L57_RS09570 | 1995902..1996774 | + | 873 | WP_000879322.1 | copper homeostasis membrane protein CopD | - |
| L6L57_RS09575 | 1996787..1997128 | + | 342 | WP_000976474.1 | YebY family protein | - |
| - | 1997156..1997427 | - | 272 | - | - | Antitoxin |
| - | 1997287..1997389 | + | 103 | - | - | Toxin |
| L6L57_RS09580 | 1997524..1998180 | + | 657 | WP_000812749.1 | protein-serine/threonine phosphatase | - |
| L6L57_RS09585 | 1998181..1998372 | - | 192 | WP_001296140.1 | YebW family protein | - |
| L6L57_RS09590 | 1998477..1998713 | - | 237 | WP_001295499.1 | YebV family protein | - |
| L6L57_RS09595 | 1998831..2000270 | - | 1440 | WP_024175799.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T234666 NZ_CP091712:1997287-1997389 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT234666 NZ_CP091712:c1997427-1997156 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGATTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGATTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
