Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2155280..2155551 | Replicon | chromosome |
| Accession | NZ_CP091704 | ||
| Organism | Escherichia coli strain KGu016 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2155410..2155513 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2155280..2155551 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6L59_RS10190 | 2151835..2152497 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| L6L59_RS10195 | 2152521..2153177 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L6L59_RS10200 | 2153279..2153509 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| L6L59_RS10205 | 2153648..2154022 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| L6L59_RS10210 | 2154026..2154898 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| L6L59_RS10215 | 2154911..2155252 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2155280..2155551 | - | 272 | - | - | Antitoxin |
| - | 2155410..2155513 | + | 104 | - | - | Toxin |
| L6L59_RS10220 | 2155648..2156304 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| L6L59_RS10225 | 2156305..2156496 | - | 192 | WP_001296140.1 | YebW family protein | - |
| L6L59_RS10230 | 2156601..2156837 | - | 237 | WP_001295499.1 | YebV family protein | - |
| L6L59_RS10235 | 2156955..2158394 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2147970..2171391 | 23421 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T234624 NZ_CP091704:2155410-2155513 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT234624 NZ_CP091704:c2155551-2155280 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
