Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 326823..327094 | Replicon | chromosome |
| Accession | NZ_CP091703 | ||
| Organism | Escherichia coli strain KOr021 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 326953..327056 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 326823..327094 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6L60_RS01580 | 323378..324040 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| L6L60_RS01585 | 324064..324720 | - | 657 | WP_076797519.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L6L60_RS01590 | 324822..325052 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| L6L60_RS01595 | 325191..325565 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| L6L60_RS01600 | 325569..326441 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| L6L60_RS01605 | 326454..326795 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 326823..327094 | - | 272 | - | - | Antitoxin |
| - | 326953..327056 | + | 104 | - | - | Toxin |
| L6L60_RS01610 | 327191..327847 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| L6L60_RS01615 | 327848..328039 | - | 192 | WP_001296140.1 | YebW family protein | - |
| L6L60_RS01620 | 328144..328380 | - | 237 | WP_001295499.1 | YebV family protein | - |
| L6L60_RS01625 | 328498..329937 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 303038..342934 | 39896 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T234590 NZ_CP091703:326953-327056 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT234590 NZ_CP091703:c327094-326823 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
