Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2651971..2652242 | Replicon | chromosome |
| Accession | NZ_CP091700 | ||
| Organism | Escherichia coli strain KFu019 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2652009..2652112 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2651971..2652242 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6L55_RS13840 | 2649128..2650567 | + | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L6L55_RS13845 | 2650685..2650921 | + | 237 | WP_001338166.1 | YebV family protein | - |
| L6L55_RS13850 | 2651026..2651217 | + | 192 | WP_001338167.1 | YebW family protein | - |
| L6L55_RS13855 | 2651218..2651874 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 2651971..2652242 | + | 272 | - | - | Antitoxin |
| - | 2652009..2652112 | - | 104 | - | - | Toxin |
| L6L55_RS13860 | 2652270..2652611 | - | 342 | WP_000976472.1 | YebY family protein | - |
| L6L55_RS13865 | 2652624..2653496 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| L6L55_RS13870 | 2653500..2653874 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| L6L55_RS13875 | 2654013..2654243 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| L6L55_RS13880 | 2654345..2655001 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L6L55_RS13885 | 2655025..2655687 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T234578 NZ_CP091700:c2652112-2652009 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT234578 NZ_CP091700:2651971-2652242 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
