Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2606012..2606280 | Replicon | chromosome |
| Accession | NZ_CP091682 | ||
| Organism | Escherichia coli strain KKo003 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2606050..2606152 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2606012..2606280 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6L54_RS12880 | 2603168..2604607 | + | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L6L54_RS12885 | 2604726..2604962 | + | 237 | WP_001295499.1 | YebV family protein | - |
| L6L54_RS12890 | 2605067..2605258 | + | 192 | WP_024186842.1 | YebW family protein | - |
| L6L54_RS12895 | 2605259..2605915 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 2606012..2606280 | + | 269 | - | - | Antitoxin |
| - | 2606050..2606152 | - | 103 | - | - | Toxin |
| L6L54_RS12900 | 2606310..2606651 | - | 342 | WP_000984819.1 | YebY family protein | - |
| L6L54_RS12905 | 2606664..2607536 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| L6L54_RS12910 | 2607540..2607914 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| L6L54_RS12915 | 2608053..2608283 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| L6L54_RS12920 | 2608385..2609041 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L6L54_RS12925 | 2609065..2609727 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T234502 NZ_CP091682:c2606152-2606050 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT234502 NZ_CP091682:2606012-2606280 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
