Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2460459..2460730 | Replicon | chromosome |
| Accession | NZ_CP091677 | ||
| Organism | Escherichia coli strain KFu022 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2460497..2460600 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2460459..2460730 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6L66_RS12135 | 2457616..2459055 | + | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L6L66_RS12140 | 2459173..2459409 | + | 237 | WP_001295499.1 | YebV family protein | - |
| L6L66_RS12145 | 2459514..2459705 | + | 192 | WP_001313035.1 | YebW family protein | - |
| L6L66_RS12150 | 2459706..2460362 | - | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| - | 2460459..2460730 | + | 272 | - | - | Antitoxin |
| - | 2460497..2460600 | - | 104 | - | - | Toxin |
| L6L66_RS12155 | 2460758..2461099 | - | 342 | WP_000976472.1 | YebY family protein | - |
| L6L66_RS12160 | 2461112..2461984 | - | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| L6L66_RS12165 | 2461988..2462362 | - | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| L6L66_RS12170 | 2462501..2462731 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| L6L66_RS12175 | 2462833..2463489 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L6L66_RS12180 | 2463513..2464175 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T234468 NZ_CP091677:c2460600-2460497 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT234468 NZ_CP091677:2460459-2460730 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
