Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2459791..2460059 | Replicon | chromosome |
| Accession | NZ_CP091673 | ||
| Organism | Escherichia coli strain KKo009 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2459829..2459931 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2459791..2460059 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6L68_RS13050 | 2456948..2458387 | + | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L6L68_RS13055 | 2458505..2458741 | + | 237 | WP_001295499.1 | YebV family protein | - |
| L6L68_RS13060 | 2458846..2459037 | + | 192 | WP_001317886.1 | YebW family protein | - |
| L6L68_RS13065 | 2459038..2459694 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 2459791..2460059 | + | 269 | - | - | Antitoxin |
| - | 2459829..2459931 | - | 103 | - | - | Toxin |
| L6L68_RS13070 | 2460089..2460430 | - | 342 | WP_000976472.1 | YebY family protein | - |
| L6L68_RS13075 | 2460443..2461315 | - | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| L6L68_RS13080 | 2461319..2461693 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| L6L68_RS13085 | 2461832..2462062 | + | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| L6L68_RS13090 | 2462164..2462820 | + | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L6L68_RS13095 | 2462844..2463506 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T234431 NZ_CP091673:c2459931-2459829 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT234431 NZ_CP091673:2459791-2460059 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
