Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1986972..1987243 | Replicon | chromosome |
| Accession | NZ_CP091662 | ||
| Organism | Escherichia coli strain KFu023 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1987102..1987205 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1986972..1987243 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6L71_RS09600 | 1983527..1984189 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| L6L71_RS09605 | 1984213..1984869 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L6L71_RS09610 | 1984971..1985201 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| L6L71_RS09615 | 1985340..1985714 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| L6L71_RS09620 | 1985718..1986590 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| L6L71_RS09625 | 1986603..1986944 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1986972..1987243 | - | 272 | - | - | Antitoxin |
| - | 1987102..1987205 | + | 104 | - | - | Toxin |
| L6L71_RS09630 | 1987340..1987996 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| L6L71_RS09635 | 1987997..1988188 | - | 192 | WP_000457842.1 | YebW family protein | - |
| L6L71_RS09640 | 1988293..1988529 | - | 237 | WP_001295499.1 | YebV family protein | - |
| L6L71_RS09645 | 1988647..1990086 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T234337 NZ_CP091662:1987102-1987205 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT234337 NZ_CP091662:c1987243-1986972 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
