Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4084512..4084783 | Replicon | chromosome |
| Accession | NZ_CP091659 | ||
| Organism | Escherichia coli strain KFu024 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4084642..4084745 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4084512..4084783 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6L61_RS20760 | 4081067..4081729 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| L6L61_RS20765 | 4081753..4082409 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L6L61_RS20770 | 4082511..4082741 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| L6L61_RS20775 | 4082880..4083254 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| L6L61_RS20780 | 4083258..4084130 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| L6L61_RS20785 | 4084143..4084484 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4084512..4084783 | - | 272 | - | - | Antitoxin |
| - | 4084642..4084745 | + | 104 | - | - | Toxin |
| L6L61_RS20790 | 4084880..4085536 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| L6L61_RS20795 | 4085537..4085728 | - | 192 | WP_001338167.1 | YebW family protein | - |
| L6L61_RS20800 | 4085833..4086069 | - | 237 | WP_001338166.1 | YebV family protein | - |
| L6L61_RS20805 | 4086187..4087626 | - | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4005627..4100621 | 94994 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T234320 NZ_CP091659:4084642-4084745 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT234320 NZ_CP091659:c4084783-4084512 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
