Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2223843..2224114 | Replicon | chromosome |
| Accession | NZ_CP091651 | ||
| Organism | Escherichia coli strain KTa008 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2223973..2224076 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2223843..2224114 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6L70_RS10655 | 2220398..2221060 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| L6L70_RS10660 | 2221084..2221740 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L6L70_RS10665 | 2221842..2222072 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| L6L70_RS10670 | 2222211..2222585 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| L6L70_RS10675 | 2222589..2223461 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| L6L70_RS10680 | 2223474..2223815 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2223843..2224114 | - | 272 | - | - | Antitoxin |
| - | 2223973..2224076 | + | 104 | - | - | Toxin |
| L6L70_RS10685 | 2224211..2224867 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| L6L70_RS10690 | 2224868..2225059 | - | 192 | WP_001296140.1 | YebW family protein | - |
| L6L70_RS10695 | 2225164..2225400 | - | 237 | WP_001295499.1 | YebV family protein | - |
| L6L70_RS10700 | 2225518..2226957 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2216533..2239954 | 23421 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T234233 NZ_CP091651:2223973-2224076 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT234233 NZ_CP091651:c2224114-2223843 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
